Analysis of interatomic Contacts of Structural Units in PDB entry:
5YH3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5YH3 entry

There are 4 chains in PDB entry 5YH3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 89	PRO 526
C	SER 159	ASP 575
B	SER 89	PRO 526
D	PRO 224	ASN 564

There are 73 helices in PDB entry 5YH3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	90	97	Right-handed alpha
Helix 2	AA2	A	118	144	Right-handed alpha
Helix 3	AA3	A	159	166	Right-handed alpha
Helix 4	AA4	A	178	191	Right-handed alpha
Helix 5	AA5	A	252	256	Right-handed 310
Helix 6	AA6	A	259	273	Right-handed alpha
Helix 7	AA7	A	292	296	Right-handed 310
Helix 8	AA8	A	298	304	Right-handed alpha
Helix 9	AA9	A	317	323	Right-handed alpha
Helix 10	AB1	A	376	382	Right-handed alpha
Helix 11	AB2	A	386	390	Right-handed 310
Helix 12	AB3	A	391	407	Right-handed alpha
Helix 13	AB4	A	419	421	Right-handed 310
Helix 14	AB5	A	442	445	Right-handed 310
Helix 15	AB6	A	446	453	Right-handed alpha
Helix 16	AB7	A	457	466	Right-handed alpha
Helix 17	AB8	A	467	471	Right-handed 310
Helix 18	AB9	A	472	481	Right-handed alpha
Helix 19	AC1	A	482	484	Right-handed 310
Helix 20	AC2	A	491	521	Right-handed alpha
Helix 21	AC3	C	160	165	Right-handed alpha
Helix 22	AC4	C	166	171	Right-handed 310
Helix 23	AC5	C	224	232	Right-handed alpha
Helix 24	AC6	C	243	256	Right-handed alpha
Helix 25	AC7	C	300	304	Right-handed 310
Helix 26	AC8	C	307	321	Right-handed alpha
Helix 27	AC9	C	340	344	Right-handed 310
Helix 28	AD1	C	346	351	Right-handed alpha
Helix 29	AD2	C	372	376	Right-handed 310
Helix 30	AD3	C	425	430	Right-handed alpha
Helix 31	AD4	C	437	455	Right-handed alpha
Helix 32	AD5	C	490	493	Right-handed 310
Helix 33	AD6	C	494	501	Right-handed alpha
Helix 34	AD7	C	505	514	Right-handed alpha
Helix 35	AD8	C	515	519	Right-handed 310
Helix 36	AD9	C	520	529	Right-handed alpha
Helix 37	AE1	C	539	565	Right-handed alpha
Helix 38	AE2	B	90	97	Right-handed alpha
Helix 39	AE3	B	99	103	Right-handed 310
Helix 40	AE4	B	118	144	Right-handed alpha
Helix 41	AE5	B	159	167	Right-handed alpha
Helix 42	AE6	B	178	191	Right-handed alpha
Helix 43	AE7	B	252	256	Right-handed 310
Helix 44	AE8	B	259	273	Right-handed alpha
Helix 45	AE9	B	292	296	Right-handed 310
Helix 46	AF1	B	298	304	Right-handed alpha
Helix 47	AF2	B	317	323	Right-handed alpha
Helix 48	AF3	B	376	382	Right-handed alpha
Helix 49	AF4	B	386	390	Right-handed 310
Helix 50	AF5	B	391	407	Right-handed alpha
Helix 51	AF6	B	418	421	Right-handed 310
Helix 52	AF7	B	442	445	Right-handed 310
Helix 53	AF8	B	446	453	Right-handed alpha
Helix 54	AF9	B	457	466	Right-handed alpha
Helix 55	AG1	B	467	471	Right-handed 310
Helix 56	AG2	B	472	481	Right-handed alpha
Helix 57	AG3	B	482	484	Right-handed 310
Helix 58	AG4	B	491	521	Right-handed alpha
Helix 59	AG5	D	225	232	Right-handed alpha
Helix 60	AG6	D	245	256	Right-handed alpha
Helix 61	AG7	D	300	304	Right-handed 310
Helix 62	AG8	D	307	321	Right-handed alpha
Helix 63	AG9	D	340	344	Right-handed 310
Helix 64	AH1	D	346	351	Right-handed alpha
Helix 65	AH2	D	372	376	Right-handed 310
Helix 66	AH3	D	394	398	Right-handed 310
Helix 67	AH4	D	424	428	Right-handed 310
Helix 68	AH5	D	446	455	Right-handed alpha
Helix 69	AH6	D	497	501	Right-handed alpha
Helix 70	AH7	D	506	514	Right-handed alpha
Helix 71	AH8	D	515	519	Right-handed 310
Helix 72	AH9	D	520	529	Right-handed alpha
Helix 73	AI1	D	539	562	Right-handed alpha

There are 16 sheets in PDB entry 5YH3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	197	first strand
Strand 2	A	224	228	anti-parallel
Strand 3	A	233	238	anti-parallel
Strand 4	A	335	342	anti-parallel
Strand 5	A	281	287	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	307	first strand
Strand 2	A	313	315	anti-parallel
Strand 3	A	329	330	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	356	first strand
Strand 2	A	413	417	anti-parallel
Strand 3	A	426	427	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	456	first strand
Strand 2	A	522	523	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	258	263	first strand
Strand 2	C	272	276	anti-parallel
Strand 3	C	281	286	anti-parallel
Strand 4	C	383	390	anti-parallel
Strand 5	C	329	335	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	355	first strand
Strand 2	C	361	363	anti-parallel
Strand 3	C	377	378	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	404	first strand
Strand 2	C	461	462	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	503	504	first strand
Strand 2	C	570	571	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	197	first strand
Strand 2	B	224	228	anti-parallel
Strand 3	B	233	238	anti-parallel
Strand 4	B	335	342	anti-parallel
Strand 5	B	281	287	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	307	first strand
Strand 2	B	313	315	anti-parallel
Strand 3	B	329	330	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	355	356	first strand
Strand 2	B	413	416	anti-parallel
Strand 3	B	426	427	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	456	first strand
Strand 2	B	522	523	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	258	263	first strand
Strand 2	D	272	276	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	285	286	first strand
Strand 2	D	383	388	anti-parallel
Strand 3	D	330	335	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	355	first strand
Strand 2	D	361	363	anti-parallel
Strand 3	D	377	378	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	402	404	first strand
Strand 2	D	461	463	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5YH3

Analysis of interatomic Contacts of Structural Units in PDB entry:
5YH3