Analysis of interatomic Contacts of Structural Units in PDB entry:
5YH8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YH8 entry

There is 1 chain in PDB entry 5YH8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO -2LYS 507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5YH8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-2 8Right-handed alpha
Helix 2
AA2
A
30 38Right-handed alpha
Helix 3
AA3
A
83 95Right-handed alpha
Helix 4
AA4
A
96 102Right-handed 310
Helix 5
AA5
A
104 108Right-handed 310
Helix 6
AA6
A
131 137Right-handed alpha
Helix 7
AA7
A
146 150Right-handed 310
Helix 8
AA8
A
205 214Right-handed alpha
Helix 9
AA9
A
231 241Right-handed alpha
Helix 10
AB1
A
266 269Right-handed 310
Helix 11
AB2
A
270 279Right-handed alpha
Helix 12
AB3
A
282 290Right-handed alpha
Helix 13
AB4
A
319 330Right-handed alpha
Helix 14
AB5
A
358 375Right-handed alpha
Helix 15
AB6
A
385 396Right-handed alpha
Helix 16
AB7
A
412 418Right-handed alpha
Helix 17
AB8
A
419 421Right-handed 310
Helix 18
AB9
A
425 430Right-handed alpha
Helix 19
AC1
A
434 446Right-handed alpha
Helix 20
AC2
A
450 469Right-handed alpha
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There are 6 sheets in PDB entry 5YH8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 15first strand
Strand 2
A
196 201parallel
Strand 3
A
178 183anti-parallel
Strand 4
A
168 174anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
48 51anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 59first strand
Strand 2
A
65 70anti-parallel
Strand 3
A
120 125anti-parallel
Strand 4
A
110 117anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 221first strand
Strand 2
A
478 484anti-parallel
Strand 3
A
244 251anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 384first strand
Strand 2
A
349 355parallel
Strand 3
A
400 404parallel
Strand 4
A
255 259anti-parallel
Strand 5
A
471 475anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 343first strand
Strand 2
A
346 347anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il