Analysis of interatomic Contacts of Structural Units in PDB entry:
5YHF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YHF entry

There is 1 chain in PDB entry 5YHF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2ALA 735
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5YHF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 24Right-handed alpha
Helix 2
AA2
A
55 73Right-handed alpha
Helix 3
AA3
A
96 107Right-handed alpha
Helix 4
AA4
A
126 137Right-handed alpha
Helix 5
AA5
A
141 147Right-handed alpha
Helix 6
AA6
A
151 153Right-handed 310
Helix 7
AA7
A
185 199Right-handed alpha
Helix 8
AA8
A
234 248Right-handed alpha
Helix 9
AA9
A
267 320Right-handed alpha
Helix 10
AB1
A
324 355Right-handed alpha
Helix 11
AB2
A
358 391Right-handed alpha
Helix 12
AB3
A
394 416Right-handed alpha
Helix 13
AB4
A
416 428Right-handed alpha
Helix 14
AB5
A
447 470Right-handed alpha
Helix 15
AB6
A
474 479Right-handed alpha
Helix 16
AB7
A
492 503Right-handed alpha
Helix 17
AB8
A
533 547Right-handed alpha
Helix 18
AB9
A
563 589Right-handed alpha
Helix 19
AC1
A
590 616Right-handed alpha
Helix 20
AC2
A
620 652Right-handed alpha
Helix 21
AC3
A
656 690Right-handed alpha
Helix 22
AC4
A
694 715Right-handed alpha
Helix 23
AC5
A
715 735Right-handed alpha
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There are 6 sheets in PDB entry 5YHF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
322 323parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 83first strand
Strand 2
A
87 93anti-parallel
Strand 3
A
42 49anti-parallel
Strand 4
A
254 262anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 161first strand
Strand 2
A
113 118anti-parallel
Strand 3
A
204 208anti-parallel
Strand 4
A
211 214anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 172first strand
Strand 2
A
178 184anti-parallel
Strand 3
A
226 229anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 473first strand
Strand 2
A
618 619parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 515first strand
Strand 2
A
523 529anti-parallel
Strand 3
A
480 487anti-parallel
Strand 4
A
551 558anti-parallel
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