Analysis of interatomic Contacts of Structural Units in PDB entry:
5YHH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YHH entry

There are 2 chains in PDB entry 5YHH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 0PRO 118
A
 SER 120ALA 210
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5YHH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 75Right-handed alpha
Helix 2
AA2
A
119 127Right-handed alpha
Helix 3
AA3
A
130 139Right-handed alpha
Helix 4
AA4
A
170 180Right-handed alpha
Helix 5
AA5
A
184 194Right-handed alpha
Helix 6
AA6
A
198 208Right-handed alpha
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There are 2 sheets in PDB entry 5YHH. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 29first strand
Strand 2
A
2 13anti-parallel
Strand 3
A
87 90anti-parallel
Strand 4
A
59 63parallel
Strand 5
A
143 149anti-parallel
Strand 6
A
108 115anti-parallel
Strand 7
A
102 105anti-parallel
Strand 8
A
159 163anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
151 153anti-parallel
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