Analysis of interatomic Contacts of Structural Units in PDB entry:
5YHI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YHI entry

There are 2 chains in PDB entry 5YHI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 0LYS 224
B
 PRO 0GLY 223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5YHI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 56Right-handed 310
Helix 2
AA2
A
63 72Right-handed alpha
Helix 3
AA3
A
73 79Right-handed 310
Helix 4
AA4
A
121 128Right-handed alpha
Helix 5
AA5
A
131 140Right-handed alpha
Helix 6
AA6
A
170 180Right-handed alpha
Helix 7
AA7
A
184 193Right-handed alpha
Helix 8
AA8
A
198 212Right-handed alpha
Helix 9
AA9
A
217 223Right-handed alpha
Helix 10
AB1
B
52 56Right-handed 310
Helix 11
AB2
B
63 72Right-handed alpha
Helix 12
AB3
B
73 79Right-handed 310
Helix 13
AB4
B
121 128Right-handed alpha
Helix 14
AB5
B
131 140Right-handed alpha
Helix 15
AB6
B
170 180Right-handed alpha
Helix 16
AB7
B
184 193Right-handed alpha
Helix 17
AB8
B
198 212Right-handed alpha
Helix 18
AB9
B
217 223Right-handed alpha
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There are 4 sheets in PDB entry 5YHI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
160 164anti-parallel
Strand 3
A
103 106anti-parallel
Strand 4
A
109 116anti-parallel
Strand 5
A
144 150anti-parallel
Strand 6
A
57 61anti-parallel
Strand 7
A
88 90parallel
Strand 8
A
6 9anti-parallel
Strand 9
A
26 28anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
31 35anti-parallel
Strand 3
A
152 155anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 3first strand
Strand 2
B
160 164anti-parallel
Strand 3
B
103 106anti-parallel
Strand 4
B
109 116anti-parallel
Strand 5
B
144 150anti-parallel
Strand 6
B
57 61anti-parallel
Strand 7
B
88 90parallel
Strand 8
B
6 9anti-parallel
Strand 9
B
26 28anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 39first strand
Strand 2
B
31 35anti-parallel
Strand 3
B
152 155anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il