Analysis of interatomic Contacts of Structural Units in PDB entry:
5YHJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YHJ entry

There are 2 chains in PDB entry 5YHJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2ASN 412
B
 GLY 2ASN 412
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5YHJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 21Right-handed alpha
Helix 2
AA2
A
23 33Right-handed alpha
Helix 3
AA3
A
51 59Right-handed alpha
Helix 4
AA4
A
71 78Right-handed alpha
Helix 5
AA5
A
83 87Right-handed 310
Helix 6
AA6
A
88 101Right-handed alpha
Helix 7
AA7
A
104 120Right-handed alpha
Helix 8
AA8
A
121 124Right-handed 310
Helix 9
AA9
A
131 147Right-handed alpha
Helix 10
AB1
A
152 154Right-handed 310
Helix 11
AB2
A
155 168Right-handed alpha
Helix 12
AB3
A
176 200Right-handed alpha
Helix 13
AB4
A
209 216Right-handed alpha
Helix 14
AB5
A
226 258Right-handed alpha
Helix 15
AB6
A
258 267Right-handed alpha
Helix 16
AB7
A
271 283Right-handed alpha
Helix 17
AB8
A
314 319Right-handed alpha
Helix 18
AB9
A
331 336Right-handed 310
Helix 19
AC1
A
361 378Right-handed alpha
Helix 20
AC2
B
13 21Right-handed alpha
Helix 21
AC3
B
23 33Right-handed alpha
Helix 22
AC4
B
51 59Right-handed alpha
Helix 23
AC5
B
71 78Right-handed alpha
Helix 24
AC6
B
83 87Right-handed 310
Helix 25
AC7
B
88 101Right-handed alpha
Helix 26
AC8
B
104 121Right-handed alpha
Helix 27
AC9
B
122 126Right-handed 310
Helix 28
AD1
B
131 147Right-handed alpha
Helix 29
AD2
B
152 154Right-handed 310
Helix 30
AD3
B
155 168Right-handed alpha
Helix 31
AD4
B
175 200Right-handed alpha
Helix 32
AD5
B
209 216Right-handed alpha
Helix 33
AD6
B
226 258Right-handed alpha
Helix 34
AD7
B
258 267Right-handed alpha
Helix 35
AD8
B
271 283Right-handed alpha
Helix 36
AD9
B
314 319Right-handed alpha
Helix 37
AE1
B
331 336Right-handed 310
Helix 38
AE2
B
361 378Right-handed alpha
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There are 6 sheets in PDB entry 5YHJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 41first strand
Strand 2
A
44 49anti-parallel
Strand 3
A
309 313parallel
Strand 4
A
288 293anti-parallel
Strand 5
A
64 65anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 130first strand
Strand 2
A
405 411anti-parallel
Strand 3
A
380 383anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 299first strand
Strand 2
A
302 304anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 41first strand
Strand 2
B
44 49anti-parallel
Strand 3
B
309 313parallel
Strand 4
B
288 293anti-parallel
Strand 5
B
64 65anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 130first strand
Strand 2
B
405 411anti-parallel
Strand 3
B
380 383anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
297 299first strand
Strand 2
B
302 304anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il