Analysis of interatomic Contacts of Structural Units in PDB entry:
5YHO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YHO entry

There are 2 chains in PDB entry 5YHO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 23ASN 260
B
 GLN 24VAL 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5YHO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 42Right-handed alpha
Helix 2
AA2
A
50 55Right-handed alpha
Helix 3
AA3
A
65 68Right-handed 310
Helix 4
AA4
A
118 129Right-handed alpha
Helix 5
AA5
A
187 191Right-handed 310
Helix 6
AA6
A
238 243Right-handed alpha
Helix 7
AA7
A
250 260Right-handed alpha
Helix 8
AA8
B
35 42Right-handed alpha
Helix 9
AA9
B
50 55Right-handed alpha
Helix 10
AB1
B
65 68Right-handed 310
Helix 11
AB2
B
118 129Right-handed alpha
Helix 12
AB3
B
187 191Right-handed 310
Helix 13
AB4
B
238 243Right-handed alpha
Helix 14
AB5
B
250 256Right-handed alpha
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There are 5 sheets in PDB entry 5YHO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 89first strand
Strand 2
A
77 81anti-parallel
Strand 3
A
70 74anti-parallel
Strand 4
A
60 63anti-parallel
Strand 5
A
98 101anti-parallel
Strand 6
A
30 33anti-parallel
Strand 7
A
230 234parallel
Strand 8
B
230 234anti-parallel
Strand 9
B
29 33parallel
Strand 10
B
99 102anti-parallel
Strand 11
B
59 63anti-parallel
Strand 12
B
70 74anti-parallel
Strand 13
B
77 81anti-parallel
Strand 14
B
88 89anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
95 96anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 112first strand
Strand 2
A
116 117first strand
Strand 3
A
135 149first strand
Strand 4
A
172 186anti-parallel
Strand 5
A
197 204anti-parallel
Strand 6
A
210 228anti-parallel
Strand 7
A
116 117anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 49first strand
Strand 2
B
95 96anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 112first strand
Strand 2
B
116 117first strand
Strand 3
B
135 150first strand
Strand 4
B
172 186anti-parallel
Strand 5
B
197 204anti-parallel
Strand 6
B
210 228anti-parallel
Strand 7
B
116 117anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il