Analysis of interatomic Contacts of Structural Units in PDB entry:
5YHP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YHP entry

There are 2 chains in PDB entry 5YHP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ALA 319
B
 MET 1ALA 319
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5YHP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 56Right-handed 310
Helix 2
AA2
A
84 99Right-handed alpha
Helix 3
AA3
A
111 124Right-handed alpha
Helix 4
AA4
A
140 149Right-handed alpha
Helix 5
AA5
A
152 156Right-handed 310
Helix 6
AA6
A
157 166Right-handed alpha
Helix 7
AA7
A
169 173Right-handed 310
Helix 8
AA8
A
175 185Right-handed alpha
Helix 9
AA9
A
188 206Right-handed alpha
Helix 10
AB1
A
212 217Right-handed alpha
Helix 11
AB2
A
218 220Right-handed 310
Helix 12
AB3
A
221 237Right-handed alpha
Helix 13
AB4
A
238 242Right-handed 310
Helix 14
AB5
A
245 248Right-handed 310
Helix 15
AB6
A
249 254Right-handed alpha
Helix 16
AB7
A
273 284Right-handed alpha
Helix 17
AB8
A
301 316Right-handed alpha
Helix 18
AB9
B
49 56Right-handed 310
Helix 19
AC1
B
84 99Right-handed alpha
Helix 20
AC2
B
111 124Right-handed alpha
Helix 21
AC3
B
140 149Right-handed alpha
Helix 22
AC4
B
152 156Right-handed 310
Helix 23
AC5
B
157 166Right-handed alpha
Helix 24
AC6
B
169 173Right-handed 310
Helix 25
AC7
B
175 185Right-handed alpha
Helix 26
AC8
B
188 206Right-handed alpha
Helix 27
AC9
B
212 217Right-handed alpha
Helix 28
AD1
B
218 220Right-handed 310
Helix 29
AD2
B
221 238Right-handed alpha
Helix 30
AD3
B
239 242Right-handed 310
Helix 31
AD4
B
245 248Right-handed 310
Helix 32
AD5
B
249 254Right-handed alpha
Helix 33
AD6
B
273 284Right-handed alpha
Helix 34
AD7
B
301 316Right-handed alpha
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There are 2 sheets in PDB entry 5YHP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 17first strand
Strand 2
A
23 30anti-parallel
Strand 3
A
61 66anti-parallel
Strand 4
A
35 40parallel
Strand 5
A
105 110parallel
Strand 6
A
128 134parallel
Strand 7
A
261 266parallel
Strand 8
A
288 292parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 17first strand
Strand 2
B
23 30anti-parallel
Strand 3
B
61 66anti-parallel
Strand 4
B
35 40parallel
Strand 5
B
105 110parallel
Strand 6
B
128 134parallel
Strand 7
B
261 266parallel
Strand 8
B
288 292parallel
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