Analysis of interatomic Contacts of Structural Units in PDB entry:
5YHS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YHS entry

There are 2 chains in PDB entry 5YHS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 470
B
 MET 1HIS 470
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5YHS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 19Right-handed alpha
Helix 2
AA2
A
30 36Right-handed alpha
Helix 3
AA3
A
42 46Right-handed 310
Helix 4
AA4
A
57 69Right-handed alpha
Helix 5
AA5
A
78 83Right-handed alpha
Helix 6
AA6
A
91 108Right-handed alpha
Helix 7
AA7
A
122 128Right-handed alpha
Helix 8
AA8
A
129 132Right-handed 310
Helix 9
AA9
A
133 152Right-handed alpha
Helix 10
AB1
A
163 173Right-handed alpha
Helix 11
AB2
A
184 210Right-handed alpha
Helix 12
AB3
A
230 245Right-handed alpha
Helix 13
AB4
A
245 254Right-handed alpha
Helix 14
AB5
A
258 268Right-handed alpha
Helix 15
AB6
A
275 286Right-handed alpha
Helix 16
AB7
A
287 289Right-handed 310
Helix 17
AB8
A
350 366Right-handed alpha
Helix 18
AB9
A
390 410Right-handed alpha
Helix 19
AC1
A
452 464Right-handed alpha
Helix 20
AC2
B
14 19Right-handed alpha
Helix 21
AC3
B
30 36Right-handed alpha
Helix 22
AC4
B
42 46Right-handed 310
Helix 23
AC5
B
57 68Right-handed alpha
Helix 24
AC6
B
78 83Right-handed alpha
Helix 25
AC7
B
91 108Right-handed alpha
Helix 26
AC8
B
122 128Right-handed alpha
Helix 27
AC9
B
129 132Right-handed 310
Helix 28
AD1
B
133 152Right-handed alpha
Helix 29
AD2
B
163 173Right-handed alpha
Helix 30
AD3
B
184 209Right-handed alpha
Helix 31
AD4
B
230 245Right-handed alpha
Helix 32
AD5
B
245 254Right-handed alpha
Helix 33
AD6
B
258 267Right-handed alpha
Helix 34
AD7
B
275 286Right-handed alpha
Helix 35
AD8
B
287 289Right-handed 310
Helix 36
AD9
B
350 366Right-handed alpha
Helix 37
AE1
B
390 410Right-handed alpha
Helix 38
AE2
B
452 464Right-handed alpha
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There are 8 sheets in PDB entry 5YHS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 12first strand
Strand 2
A
72 76parallel
Strand 3
A
111 117parallel
Strand 4
A
157 162parallel
Strand 5
A
214 220parallel
Strand 6
A
291 295parallel
Strand 7
A
369 374parallel
Strand 8
A
413 420parallel
Strand 9
A
8 12parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 226first strand
Strand 2
A
300 304parallel
Strand 3
A
330 334anti-parallel
Strand 4
A
326 327anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 384first strand
Strand 2
A
387 388anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 441first strand
Strand 2
A
449 451anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 12first strand
Strand 2
B
72 76parallel
Strand 3
B
111 117parallel
Strand 4
B
157 162parallel
Strand 5
B
214 220parallel
Strand 6
B
291 295parallel
Strand 7
B
370 375parallel
Strand 8
B
414 420parallel
Strand 9
B
8 12parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 226first strand
Strand 2
B
300 304parallel
Strand 3
B
332 334anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
383 384first strand
Strand 2
B
387 388anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
439 441first strand
Strand 2
B
449 451anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il