Analysis of interatomic Contacts of Structural Units in PDB entry:
5YHU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YHU entry

There are 2 chains in PDB entry 5YHU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 333SER 523
B
 SER 333ALA 522
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 5YHU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
348 352Right-handed 310
Helix 2
AA2
B
348 352Right-handed 310
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There are 10 sheets in PDB entry 5YHU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 346first strand
Strand 2
A
506 515anti-parallel
Strand 3
A
493 503anti-parallel
Strand 4
A
419 428anti-parallel
Strand 5
A
431 436anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 346first strand
Strand 2
A
506 515anti-parallel
Strand 3
A
493 503anti-parallel
Strand 4
A
419 428anti-parallel
Strand 5
A
453 455anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 356first strand
Strand 2
A
407 410anti-parallel
Strand 3
A
413 416anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
367 374first strand
Strand 2
A
393 401anti-parallel
Strand 3
A
461 472anti-parallel
Strand 4
A
438 441anti-parallel
Strand 5
A
447 449anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 379first strand
Strand 2
A
384 388anti-parallel
Strand 3
A
518 521parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
344 346first strand
Strand 2
B
506 515anti-parallel
Strand 3
B
493 503anti-parallel
Strand 4
B
419 428anti-parallel
Strand 5
B
431 436anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
344 346first strand
Strand 2
B
506 515anti-parallel
Strand 3
B
493 503anti-parallel
Strand 4
B
419 428anti-parallel
Strand 5
B
453 455anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 356first strand
Strand 2
B
407 410anti-parallel
Strand 3
B
413 416anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
367 374first strand
Strand 2
B
393 401anti-parallel
Strand 3
B
461 472anti-parallel
Strand 4
B
438 439anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
377 379first strand
Strand 2
B
384 388anti-parallel
Strand 3
B
518 521parallel
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