Analysis of interatomic Contacts of Structural Units in PDB entry:
5YHW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5YHW entry

There are 3 chains in PDB entry 5YHW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 114	PRO 590
B	THR 114	PRO 590
C	THR 114	ALA 483

There are221 helices in PDB entry 5YHW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	129	137	Right-handed alpha
Helix 2	AA2	A	138	143	Right-handed alpha
Helix 3	AA3	A	144	147	Right-handed 310
Helix 4	AA4	A	150	156	Right-handed 310
Helix 5	AA5	A	163	186	Right-handed alpha
Helix 6	AA6	A	187	190	Right-handed 310
Helix 7	AA7	A	192	206	Right-handed alpha
Helix 8	AA8	A	214	220	Right-handed alpha
Helix 9	AA9	A	220	226	Right-handed alpha
Helix 10	AB1	A	232	248	Right-handed alpha
Helix 11	AB2	A	250	257	Right-handed alpha
Helix 12	AB3	A	260	273	Right-handed alpha
Helix 13	AB4	A	291	299	Right-handed 310
Helix 14	AB5	A	309	324	Right-handed alpha
Helix 15	AB6	A	330	338	Right-handed alpha
Helix 16	AB7	A	355	373	Right-handed alpha
Helix 17	AB8	A	376	394	Right-handed alpha
Helix 18	AB9	A	411	414	Right-handed 310
Helix 19	AC1	A	415	421	Right-handed alpha
Helix 20	AC2	A	424	432	Right-handed alpha
Helix 21	AC3	A	435	437	Right-handed 310
Helix 22	AC4	A	438	450	Right-handed alpha
Helix 23	AC5	A	469	474	Right-handed 310
Helix 24	AC6	A	475	483	Right-handed alpha
Helix 25	AC7	A	495	497	Right-handed 310
Helix 26	AC8	A	514	519	Right-handed 310
Helix 27	AC9	A	534	539	Right-handed alpha
Helix 28	AD1	A	559	577	Right-handed alpha
Helix 29	AD2	A	584	589	Right-handed alpha
Helix 30	AD3	B	129	137	Right-handed alpha
Helix 31	AD4	B	138	143	Right-handed alpha
Helix 32	AD5	B	144	147	Right-handed 310
Helix 33	AD6	B	150	156	Right-handed 310
Helix 34	AD7	B	163	186	Right-handed alpha
Helix 35	AD8	B	187	190	Right-handed 310
Helix 36	AD9	B	192	206	Right-handed alpha
Helix 37	AE1	B	213	217	Right-handed 310
Helix 38	AE2	B	220	226	Right-handed alpha
Helix 39	AE3	B	232	249	Right-handed alpha
Helix 40	AE4	B	250	257	Right-handed alpha
Helix 41	AE5	B	260	273	Right-handed alpha
Helix 42	AE6	B	291	300	Right-handed 310
Helix 43	AE7	B	309	324	Right-handed alpha
Helix 44	AE8	B	330	337	Right-handed alpha
Helix 45	AE9	B	355	373	Right-handed alpha
Helix 46	AF1	B	376	394	Right-handed alpha
Helix 47	AF2	B	395	397	Right-handed 310
Helix 48	AF3	B	402	404	Right-handed 310
Helix 49	AF4	B	411	414	Right-handed 310
Helix 50	AF5	B	415	420	Right-handed alpha
Helix 51	AF6	B	421	423	Right-handed 310
Helix 52	AF7	B	424	432	Right-handed alpha
Helix 53	AF8	B	435	437	Right-handed 310
Helix 54	AF9	B	438	450	Right-handed alpha
Helix 55	AG1	B	469	474	Right-handed 310
Helix 56	AG2	B	475	482	Right-handed alpha
Helix 57	AG3	B	515	519	Right-handed 310
Helix 58	AG4	B	534	539	Right-handed alpha
Helix 59	AG5	B	559	577	Right-handed alpha
Helix 60	AG6	B	584	589	Right-handed alpha
Helix 61	AG7	C	129	137	Right-handed alpha
Helix 62	AG8	C	138	143	Right-handed alpha
Helix 63	AG9	C	144	147	Right-handed 310
Helix 64	AH1	C	150	156	Right-handed 310
Helix 65	AH2	C	163	186	Right-handed alpha
Helix 66	AH3	C	187	190	Right-handed 310
Helix 67	AH4	C	192	206	Right-handed alpha
Helix 68	AH5	C	214	220	Right-handed alpha
Helix 69	AH6	C	220	226	Right-handed alpha
Helix 70	AH7	C	232	249	Right-handed alpha
Helix 71	AH8	C	250	257	Right-handed alpha
Helix 72	AH9	C	260	273	Right-handed alpha
Helix 73	AI1	C	291	300	Right-handed 310
Helix 74	AI2	C	309	324	Right-handed alpha
Helix 75	AI3	C	330	337	Right-handed alpha
Helix 76	AI4	C	355	373	Right-handed alpha
Helix 77	AI5	C	376	394	Right-handed alpha
Helix 78	AI6	C	395	397	Right-handed 310
Helix 79	AI7	C	402	404	Right-handed 310
Helix 80	AI8	C	411	414	Right-handed 310
Helix 81	AI9	C	415	420	Right-handed alpha
Helix 82	AJ1	C	421	423	Right-handed 310
Helix 83	AJ2	C	424	432	Right-handed alpha
Helix 84	AJ3	C	435	437	Right-handed 310
Helix 85	AJ4	C	438	450	Right-handed alpha
Helix 86	AJ5	C	469	474	Right-handed 310
Helix 87	AJ6	C	475	482	Right-handed alpha
Helix 88	AJ7	C	514	519	Right-handed 310
Helix 89	AJ8	C	559	577	Right-handed alpha
Helix 90	AJ9	C	584	589	Right-handed alpha
Helix 91	AK1	D	129	137	Right-handed alpha
Helix 92	AK2	D	138	143	Right-handed alpha
Helix 93	AK3	D	144	146	Right-handed 310
Helix 94	AK4	D	150	156	Right-handed 310
Helix 95	AK5	D	163	186	Right-handed alpha
Helix 96	AK6	D	187	190	Right-handed 310
Helix 97	AK7	D	192	206	Right-handed alpha
Helix 98	AK8	D	214	220	Right-handed alpha
Helix 99	AK9	D	220	226	Right-handed alpha
Helix 100	AL1	D	232	248	Right-handed alpha
Helix 101	AL2	D	250	257	Right-handed alpha
Helix 102	AL3	D	260	273	Right-handed alpha
Helix 103	AL4	D	291	295	Right-handed 310
Helix 104	AL5	D	296	300	Right-handed 310
Helix 105	AL6	D	309	324	Right-handed alpha
Helix 106	AL7	D	330	338	Right-handed alpha
Helix 107	AL8	D	355	373	Right-handed alpha
Helix 108	AL9	D	376	394	Right-handed alpha
Helix 109	AM1	D	411	414	Right-handed 310
Helix 110	AM2	D	415	420	Right-handed alpha
Helix 111	AM3	D	421	423	Right-handed 310
Helix 112	AM4	D	424	432	Right-handed alpha
Helix 113	AM5	D	435	437	Right-handed 310
Helix 114	AM6	D	438	450	Right-handed alpha
Helix 115	AM7	D	514	519	Right-handed 310
Helix 116	AM8	D	534	539	Right-handed alpha
Helix 117	AM9	E	129	137	Right-handed alpha
Helix 118	AN1	E	138	143	Right-handed alpha
Helix 119	AN2	E	144	147	Right-handed 310
Helix 120	AN3	E	150	156	Right-handed 310
Helix 121	AN4	E	163	186	Right-handed alpha
Helix 122	AN5	E	187	190	Right-handed 310
Helix 123	AN6	E	192	205	Right-handed alpha
Helix 124	AN7	E	206	208	Right-handed 310
Helix 125	AN8	E	214	220	Right-handed alpha
Helix 126	AN9	E	220	226	Right-handed alpha
Helix 127	AO1	E	232	248	Right-handed alpha
Helix 128	AO2	E	250	257	Right-handed alpha
Helix 129	AO3	E	260	273	Right-handed alpha
Helix 130	AO4	E	291	295	Right-handed 310
Helix 131	AO5	E	296	300	Right-handed 310
Helix 132	AO6	E	309	324	Right-handed alpha
Helix 133	AO7	E	330	337	Right-handed alpha
Helix 134	AO8	E	355	373	Right-handed alpha
Helix 135	AO9	E	376	393	Right-handed alpha
Helix 136	AP1	E	415	421	Right-handed alpha
Helix 137	AP2	E	424	433	Right-handed alpha
Helix 138	AP3	E	435	437	Right-handed 310
Helix 139	AP4	E	438	450	Right-handed alpha
Helix 140	AP5	E	514	518	Right-handed 310
Helix 141	AP6	E	534	539	Right-handed alpha
Helix 142	AP7	F	129	137	Right-handed alpha
Helix 143	AP8	F	138	143	Right-handed alpha
Helix 144	AP9	F	144	147	Right-handed 310
Helix 145	AQ1	F	150	156	Right-handed 310
Helix 146	AQ2	F	163	186	Right-handed alpha
Helix 147	AQ3	F	187	190	Right-handed 310
Helix 148	AQ4	F	192	205	Right-handed alpha
Helix 149	AQ5	F	206	208	Right-handed 310
Helix 150	AQ6	F	214	220	Right-handed alpha
Helix 151	AQ7	F	220	226	Right-handed alpha
Helix 152	AQ8	F	232	248	Right-handed alpha
Helix 153	AQ9	F	250	257	Right-handed alpha
Helix 154	AR1	F	260	273	Right-handed alpha
Helix 155	AR2	F	291	299	Right-handed 310
Helix 156	AR3	F	309	324	Right-handed alpha
Helix 157	AR4	F	330	338	Right-handed alpha
Helix 158	AR5	F	355	373	Right-handed alpha
Helix 159	AR6	F	376	394	Right-handed alpha
Helix 160	AR7	F	395	397	Right-handed 310
Helix 161	AR8	F	402	404	Right-handed 310
Helix 162	AR9	F	411	414	Right-handed 310
Helix 163	AS1	F	415	420	Right-handed alpha
Helix 164	AS2	F	421	423	Right-handed 310
Helix 165	AS3	F	424	432	Right-handed alpha
Helix 166	AS4	F	435	437	Right-handed 310
Helix 167	AS5	F	438	450	Right-handed alpha
Helix 168	AS6	F	469	475	Right-handed 310
Helix 169	AS7	F	476	482	Right-handed alpha
Helix 170	AS8	F	495	497	Right-handed 310
Helix 171	AS9	F	514	519	Right-handed 310
Helix 172	AT1	F	534	539	Right-handed alpha
Helix 173	AT2	F	559	577	Right-handed alpha
Helix 174	AT3	F	584	589	Right-handed alpha
Helix 175	AT4	G	129	137	Right-handed alpha
Helix 176	AT5	G	138	143	Right-handed alpha
Helix 177	AT6	G	144	147	Right-handed 310
Helix 178	AT7	G	150	156	Right-handed 310
Helix 179	AT8	G	163	186	Right-handed alpha
Helix 180	AT9	G	187	190	Right-handed 310
Helix 181	AU1	G	192	206	Right-handed alpha
Helix 182	AU2	G	213	217	Right-handed 310
Helix 183	AU3	G	220	226	Right-handed alpha
Helix 184	AU4	G	232	248	Right-handed alpha
Helix 185	AU5	G	250	257	Right-handed alpha
Helix 186	AU6	G	260	273	Right-handed alpha
Helix 187	AU7	G	291	300	Right-handed 310
Helix 188	AU8	G	309	324	Right-handed alpha
Helix 189	AU9	G	330	336	Right-handed alpha
Helix 190	AV1	G	355	373	Right-handed alpha
Helix 191	AV2	G	376	392	Right-handed alpha
Helix 192	AV3	G	402	404	Right-handed 310
Helix 193	AV4	G	411	414	Right-handed 310
Helix 194	AV5	G	415	421	Right-handed alpha
Helix 195	AV6	G	424	432	Right-handed alpha
Helix 196	AV7	G	441	450	Right-handed alpha
Helix 197	AV8	G	514	518	Right-handed 310
Helix 198	AV9	G	534	539	Right-handed alpha
Helix 199	AW1	H	129	137	Right-handed alpha
Helix 200	AW2	H	138	143	Right-handed alpha
Helix 201	AW3	H	144	147	Right-handed 310
Helix 202	AW4	H	150	155	Right-handed 310
Helix 203	AW5	H	163	186	Right-handed alpha
Helix 204	AW6	H	187	190	Right-handed 310
Helix 205	AW7	H	192	206	Right-handed alpha
Helix 206	AW8	H	214	220	Right-handed alpha
Helix 207	AW9	H	220	226	Right-handed alpha
Helix 208	AX1	H	232	248	Right-handed alpha
Helix 209	AX2	H	250	257	Right-handed alpha
Helix 210	AX3	H	260	271	Right-handed alpha
Helix 211	AX4	H	291	298	Right-handed 310
Helix 212	AX5	H	309	324	Right-handed alpha
Helix 213	AX6	H	330	336	Right-handed alpha
Helix 214	AX7	H	355	373	Right-handed alpha
Helix 215	AX8	H	376	393	Right-handed alpha
Helix 216	AX9	H	411	414	Right-handed 310
Helix 217	AY1	H	415	421	Right-handed alpha
Helix 218	AY2	H	424	432	Right-handed alpha
Helix 219	AY3	H	441	450	Right-handed alpha
Helix 220	AY4	H	514	519	Right-handed 310
Helix 221	AY5	H	534	539	Right-handed alpha

There are 30 sheets in PDB entry 5YHW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	120	first strand
Strand 2	A	124	128	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	343	first strand
Strand 2	A	346	352	anti-parallel
Strand 3	A	521	522	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	401	first strand
Strand 2	A	405	407	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	460	first strand
Strand 2	A	547	555	anti-parallel
Strand 3	A	499	507	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	120	first strand
Strand 2	B	124	128	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	343	first strand
Strand 2	B	346	352	anti-parallel
Strand 3	B	521	522	parallel
Strand 4	B	530	531	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	400	first strand
Strand 2	B	406	407	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	460	first strand
Strand 2	B	547	555	anti-parallel
Strand 3	B	500	507	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	120	first strand
Strand 2	C	124	128	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	343	first strand
Strand 2	C	346	352	anti-parallel
Strand 3	C	521	522	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	399	400	first strand
Strand 2	C	406	407	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	455	460	first strand
Strand 2	C	547	555	anti-parallel
Strand 3	C	500	507	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	120	first strand
Strand 2	D	124	128	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	343	first strand
Strand 2	D	346	352	anti-parallel
Strand 3	D	521	522	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	455	457	first strand
Strand 2	D	549	555	anti-parallel
Strand 3	D	501	505	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	120	first strand
Strand 2	E	124	128	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	339	342	first strand
Strand 2	E	347	352	anti-parallel
Strand 3	E	520	522	parallel
Strand 4	E	531	532	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	455	457	first strand
Strand 2	E	547	555	anti-parallel
Strand 3	E	501	507	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	116	120	first strand
Strand 2	F	124	128	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	339	343	first strand
Strand 2	F	346	352	anti-parallel
Strand 3	F	521	522	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	399	400	first strand
Strand 2	F	406	407	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	455	460	first strand
Strand 2	F	547	555	anti-parallel
Strand 3	F	499	507	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	116	118	first strand
Strand 2	G	126	128	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	338	341	first strand
Strand 2	G	348	352	anti-parallel
Strand 3	G	520	522	parallel
Strand 4	G	531	532	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	399	400	first strand
Strand 2	G	406	407	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	455	456	first strand
Strand 2	G	547	555	anti-parallel
Strand 3	G	501	507	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	116	118	first strand
Strand 2	H	126	128	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	339	341	first strand
Strand 2	H	348	352	anti-parallel
Strand 3	H	521	522	parallel
Strand 4	H	530	531	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	399	400	first strand
Strand 2	H	406	407	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	455	456	first strand
Strand 2	H	547	555	anti-parallel
Strand 3	H	501	507	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5YHW

Analysis of interatomic Contacts of Structural Units in PDB entry:
5YHW