Analysis of interatomic Contacts of Structural Units in PDB entry:
5YID


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YID entry

There is 1 chain in PDB entry 5YID (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 5LEU 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5YID. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 57Right-handed 310
Helix 2
AA2
A
61 65Right-handed 310
Helix 3
AA3
A
110 114Right-handed 310
Helix 4
AA4
A
115 120Right-handed alpha
Helix 5
AA5
A
130 134Right-handed 310
Helix 6
AA6
A
140 148Right-handed alpha
Helix 7
AA7
A
176 178Right-handed 310
Helix 8
AA8
A
225 234Right-handed alpha
Helix 9
AA9
A
271 275Right-handed alpha
Helix 10
AB1
A
304 310Right-handed alpha
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There are 4 sheets in PDB entry 5YID. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 79first strand
Strand 2
A
82 95anti-parallel
Strand 3
A
17 24anti-parallel
Strand 4
A
6 13anti-parallel
Strand 5
A
168 172anti-parallel
Strand 6
A
155 159anti-parallel
Strand 7
A
311 316anti-parallel
Strand 8
A
321 327anti-parallel
Strand 9
A
180 188anti-parallel
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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 79first strand
Strand 2
A
82 95anti-parallel
Strand 3
A
98 109anti-parallel
Strand 4
A
42 45parallel
Strand 5
A
124 127anti-parallel
Strand 6
A
30 36parallel
Strand 7
A
17 24anti-parallel
Strand 8
A
6 13anti-parallel
Strand 9
A
168 172anti-parallel
Strand 10
A
155 159anti-parallel
Strand 11
A
311 316anti-parallel
Strand 12
A
321 327anti-parallel
Strand 13
A
180 188anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 270first strand
Strand 2
A
259 262anti-parallel
Strand 3
A
196 203anti-parallel
Strand 4
A
206 215anti-parallel
Strand 5
A
300 303parallel
Strand 6
A
222 224anti-parallel
Strand 7
A
291 293parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 240first strand
Strand 2
A
247 250anti-parallel
Strand 3
A
286 289anti-parallel
Strand 4
A
276 278anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il