Analysis of interatomic Contacts of Structural Units in PDB entry:
5YII


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YII entry

There is 1 chain in PDB entry 5YII (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 47THR 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 5YII. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 63Right-handed alpha
Helix 2
AA2
A
75 89Right-handed alpha
Helix 3
AA3
A
99 111Right-handed alpha
Helix 4
AA4
A
122 125Right-handed 310
Helix 5
AA5
A
148 151Right-handed 310
Helix 6
AA6
A
178 182Right-handed 310
Helix 7
AA7
A
206 208Right-handed 310
Helix 8
AA8
A
216 219Right-handed 310
Helix 9
AA9
A
220 227Right-handed alpha
Helix 10
AB1
A
235 253Right-handed alpha
Helix 11
AB2
A
254 276Right-handed alpha
Helix 12
AB3
A
284 288Right-handed 310
Helix 13
AB4
A
299 303Right-handed 310
Helix 14
AB5
A
304 315Right-handed alpha
Helix 15
AB6
A
338 356Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 5YII. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 73first strand
Strand 2
A
199 204anti-parallel
Strand 3
A
184 187anti-parallel
Strand 4
A
164 167parallel
Strand 5
A
141 144parallel
Strand 6
A
92 97parallel
Strand 7
A
114 120parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 147first strand
Strand 2
A
152 153anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 281first strand
Strand 2
A
292 297anti-parallel
Strand 3
A
329 332anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il