Analysis of interatomic Contacts of Structural Units in PDB entry:
5YIJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YIJ entry

There are 4 chains in PDB entry 5YIJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 231GLU 1192
C
 MET 1LEU 71
D
 MET 1GLY 76
G
 HIS 0GLY 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 5YIJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
233 236Right-handed 310
Helix 2
AA2
A
237 251Right-handed alpha
Helix 3
AA3
A
278 302Right-handed alpha
Helix 4
AA4
A
314 318Right-handed 310
Helix 5
AA5
A
319 332Right-handed alpha
Helix 6
AA6
A
343 365Right-handed alpha
Helix 7
AA7
A
365 370Right-handed alpha
Helix 8
AA8
A
376 389Right-handed alpha
Helix 9
AA9
A
397 409Right-handed alpha
Helix 10
AB1
A
410 414Right-handed 310
Helix 11
AB2
A
417 433Right-handed alpha
Helix 12
AB3
A
434 452Right-handed alpha
Helix 13
AB4
A
515 521Right-handed alpha
Helix 14
AB5
A
522 527Right-handed alpha
Helix 15
AB6
A
544 553Right-handed alpha
Helix 16
AB7
A
554 563Right-handed alpha
Helix 17
AB8
A
563 578Right-handed alpha
Helix 18
AB9
A
580 587Right-handed alpha
Helix 19
AC1
A
599 615Right-handed alpha
Helix 20
AC2
A
616 619Right-handed 310
Helix 21
AC3
A
632 643Right-handed alpha
Helix 22
AC4
A
644 651Right-handed alpha
Helix 23
AC5
A
653 667Right-handed alpha
Helix 24
AC6
A
684 696Right-handed alpha
Helix 25
AC7
A
700 713Right-handed alpha
Helix 26
AC8
A
718 727Right-handed alpha
Helix 27
AC9
A
734 756Right-handed alpha
Helix 28
AD1
A
771 789Right-handed alpha
Helix 29
AD2
A
797 809Right-handed alpha
Helix 30
AD3
A
810 814Right-handed 310
Helix 31
AD4
A
825 830Right-handed alpha
Helix 32
AD5
A
913 935Right-handed alpha
Helix 33
AD6
A
940 953Right-handed alpha
Helix 34
AD7
A
954 956Right-handed 310
Helix 35
AD8
A
961 969Right-handed alpha
Helix 36
AD9
A
969 983Right-handed alpha
Helix 37
AE1
A
986 996Right-handed alpha
Helix 38
AE2
A
998 1004Right-handed alpha
Helix 39
AE3
A
1009 1042Right-handed alpha
Helix 40
AE4
A
1044 1053Right-handed alpha
Helix 41
AE5
A
1057 1061Right-handed 310
Helix 42
AE6
A
1067 1082Right-handed alpha
Helix 43
AE7
A
1093 1117Right-handed alpha
Helix 44
AE8
A
1122 1150Right-handed alpha
Helix 45
AE9
A
1159 1191Right-handed alpha
Helix 46
AF1
C
22 35Right-handed alpha
Helix 47
AF2
D
22 35Right-handed alpha
Helix 48
AF3
D
37 39Right-handed 310
Helix 49
AF4
D
55 60Right-handed alpha
Helix 50
AF5
G
22 35Right-handed alpha
Helix 51
AF6
G
37 39Right-handed 310
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There are 11 sheets in PDB entry 5YIJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 267first strand
Strand 2
A
270 272anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
459 460first strand
Strand 2
A
535 536anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
477 479first strand
Strand 2
A
511 513anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
624 626first strand
Strand 2
A
629 631anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
670 671first strand
Strand 2
A
682 683anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
763 768first strand
Strand 2
A
836 841anti-parallel
Strand 3
A
889 899parallel
Strand 4
A
871 883anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
818 822first strand
Strand 2
A
862 866anti-parallel
Strand 3
A
850 852anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 15first strand
Strand 2
C
3 6anti-parallel
Strand 3
C
65 68parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 45first strand
Strand 2
C
48 50anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 16first strand
Strand 2
D
2 7anti-parallel
Strand 3
D
66 71parallel
Strand 4
D
41 45anti-parallel
Strand 5
D
48 49anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
12 17first strand
Strand 2
G
1 7anti-parallel
Strand 3
G
66 71parallel
Strand 4
G
41 45anti-parallel
Strand 5
G
48 50anti-parallel
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