Analysis of interatomic Contacts of Structural Units in PDB entry:
5YIM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YIM entry

There are 2 chains in PDB entry 5YIM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 230VAL 1184
C
 GLY 231HIS 620
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 81 helices in PDB entry 5YIM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
237 251Right-handed alpha
Helix 2
AA2
A
278 302Right-handed alpha
Helix 3
AA3
A
314 318Right-handed 310
Helix 4
AA4
A
319 331Right-handed alpha
Helix 5
AA5
A
346 364Right-handed alpha
Helix 6
AA6
A
365 370Right-handed alpha
Helix 7
AA7
A
376 389Right-handed alpha
Helix 8
AA8
A
398 410Right-handed alpha
Helix 9
AA9
A
417 434Right-handed alpha
Helix 10
AB1
A
434 452Right-handed alpha
Helix 11
AB2
A
515 521Right-handed alpha
Helix 12
AB3
A
522 529Right-handed alpha
Helix 13
AB4
A
530 533Right-handed 310
Helix 14
AB5
A
546 553Right-handed alpha
Helix 15
AB6
A
554 563Right-handed alpha
Helix 16
AB7
A
563 587Right-handed alpha
Helix 17
AB8
A
599 615Right-handed alpha
Helix 18
AB9
A
616 619Right-handed 310
Helix 19
AC1
A
632 643Right-handed alpha
Helix 20
AC2
A
644 652Right-handed alpha
Helix 21
AC3
A
653 667Right-handed alpha
Helix 22
AC4
A
684 696Right-handed alpha
Helix 23
AC5
A
700 714Right-handed alpha
Helix 24
AC6
A
715 727Right-handed alpha
Helix 25
AC7
A
734 749Right-handed alpha
Helix 26
AC8
A
771 788Right-handed alpha
Helix 27
AC9
A
797 808Right-handed alpha
Helix 28
AD1
A
811 815Right-handed 310
Helix 29
AD2
A
901 904Right-handed 310
Helix 30
AD3
A
912 935Right-handed alpha
Helix 31
AD4
A
940 953Right-handed alpha
Helix 32
AD5
A
954 956Right-handed 310
Helix 33
AD6
A
959 969Right-handed alpha
Helix 34
AD7
A
969 983Right-handed alpha
Helix 35
AD8
A
987 995Right-handed alpha
Helix 36
AD9
A
1009 1042Right-handed alpha
Helix 37
AE1
A
1048 1054Right-handed alpha
Helix 38
AE2
A
1065 1084Right-handed alpha
Helix 39
AE3
A
1093 1116Right-handed alpha
Helix 40
AE4
A
1124 1151Right-handed alpha
Helix 41
AE5
A
1160 1184Right-handed alpha
Helix 42
AE6
C
237 251Right-handed alpha
Helix 43
AE7
C
278 302Right-handed alpha
Helix 44
AE8
C
314 318Right-handed 310
Helix 45
AE9
C
319 332Right-handed alpha
Helix 46
AF1
C
348 359Right-handed alpha
Helix 47
AF2
C
382 387Right-handed alpha
Helix 48
AF3
C
397 411Right-handed alpha
Helix 49
AF4
C
412 414Right-handed 310
Helix 50
AF5
C
417 433Right-handed alpha
Helix 51
AF6
C
434 452Right-handed alpha
Helix 52
AF7
C
515 521Right-handed alpha
Helix 53
AF8
C
522 529Right-handed alpha
Helix 54
AF9
C
548 553Right-handed alpha
Helix 55
AG1
C
553 563Right-handed alpha
Helix 56
AG2
C
563 587Right-handed alpha
Helix 57
AG3
C
599 615Right-handed alpha
Helix 58
AG4
C
616 619Right-handed 310
Helix 59
AG5
C
632 643Right-handed alpha
Helix 60
AG6
C
644 652Right-handed alpha
Helix 61
AG7
C
653 667Right-handed alpha
Helix 62
AG8
C
685 696Right-handed alpha
Helix 63
AG9
C
704 714Right-handed alpha
Helix 64
AH1
C
715 727Right-handed alpha
Helix 65
AH2
C
734 749Right-handed alpha
Helix 66
AH3
C
750 752Right-handed 310
Helix 67
AH4
C
771 788Right-handed alpha
Helix 68
AH5
C
797 808Right-handed alpha
Helix 69
AH6
C
912 935Right-handed alpha
Helix 70
AH7
C
942 952Right-handed alpha
Helix 71
AH8
C
953 956Right-handed 310
Helix 72
AH9
C
961 983Right-handed alpha
Helix 73
AI1
C
986 995Right-handed alpha
Helix 74
AI2
C
1010 1042Right-handed alpha
Helix 75
AI3
C
1045 1055Right-handed alpha
Helix 76
AI4
C
1056 1060Right-handed 310
Helix 77
AI5
C
1063 1084Right-handed alpha
Helix 78
AI6
C
1090 1092Right-handed 310
Helix 79
AI7
C
1093 1115Right-handed alpha
Helix 80
AI8
C
1121 1151Right-handed alpha
Helix 81
AI9
C
1160 1188Right-handed alpha
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There are 9 sheets in PDB entry 5YIM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 267first strand
Strand 2
A
270 272anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
502 503first strand
Strand 2
A
475 478anti-parallel
Strand 3
A
512 513anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
624 626first strand
Strand 2
A
629 631anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
670 671first strand
Strand 2
A
682 683anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
763 768first strand
Strand 2
A
836 841anti-parallel
Strand 3
A
891 899parallel
Strand 4
A
871 879anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
819 822first strand
Strand 2
A
862 865anti-parallel
Strand 3
A
850 851anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
475 476first strand
Strand 2
C
487 488anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
763 768first strand
Strand 2
C
836 841anti-parallel
Strand 3
C
891 899parallel
Strand 4
C
871 879anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
819 822first strand
Strand 2
C
862 865anti-parallel
Strand 3
C
849 851anti-parallel
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