Analysis of interatomic Contacts of Structural Units in PDB entry:
5YIX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YIX entry

There are 2 chains in PDB entry 5YIX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 128ILE 483
B
 PRO 105GLN 152
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5YIX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
130 153Right-handed alpha
Helix 2
AA2
A
155 171Right-handed alpha
Helix 3
AA3
A
175 180Right-handed alpha
Helix 4
AA4
A
181 191Right-handed alpha
Helix 5
AA5
A
235 275Right-handed alpha
Helix 6
AA6
A
279 301Right-handed alpha
Helix 7
AA7
A
303 335Right-handed alpha
Helix 8
AA8
A
338 347Right-handed alpha
Helix 9
AA9
A
354 361Right-handed alpha
Helix 10
AB1
A
363 373Right-handed alpha
Helix 11
AB2
A
373 392Right-handed alpha
Helix 12
AB3
A
394 423Right-handed alpha
Helix 13
AB4
A
423 432Right-handed alpha
Helix 14
AB5
A
433 435Right-handed 310
Helix 15
AB6
A
440 459Right-handed alpha
Helix 16
AB7
A
460 464Right-handed 310
Helix 17
AB8
A
466 483Right-handed alpha
Helix 18
AB9
B
143 151Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5YIX.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 122first strand
Strand 2
B
131 132anti-parallel
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