Analysis of interatomic Contacts of Structural Units in PDB entry:
5YIY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YIY entry

There are 2 chains in PDB entry 5YIY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 5PRO 394
B
 ASN 5ARG 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 5YIY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 34Right-handed alpha
Helix 2
AA2
A
47 51Right-handed 310
Helix 3
AA3
A
66 70Right-handed 310
Helix 4
AA4
A
82 94Right-handed alpha
Helix 5
AA5
A
106 111Right-handed alpha
Helix 6
AA6
A
114 122Right-handed alpha
Helix 7
AA7
A
145 153Right-handed alpha
Helix 8
AA8
A
172 197Right-handed alpha
Helix 9
AA9
A
206 214Right-handed alpha
Helix 10
AB1
A
214 223Right-handed alpha
Helix 11
AB2
A
267 278Right-handed alpha
Helix 12
AB3
A
280 284Right-handed 310
Helix 13
AB4
A
291 298Right-handed alpha
Helix 14
AB5
A
298 311Right-handed alpha
Helix 15
AB6
A
314 325Right-handed alpha
Helix 16
AB7
A
334 339Right-handed alpha
Helix 17
AB8
A
341 347Right-handed alpha
Helix 18
AB9
A
386 391Right-handed alpha
Helix 19
AC1
B
22 34Right-handed alpha
Helix 20
AC2
B
47 51Right-handed 310
Helix 21
AC3
B
66 70Right-handed 310
Helix 22
AC4
B
82 94Right-handed alpha
Helix 23
AC5
B
106 111Right-handed alpha
Helix 24
AC6
B
114 122Right-handed alpha
Helix 25
AC7
B
145 153Right-handed alpha
Helix 26
AC8
B
172 197Right-handed alpha
Helix 27
AC9
B
206 214Right-handed alpha
Helix 28
AD1
B
214 222Right-handed alpha
Helix 29
AD2
B
267 278Right-handed alpha
Helix 30
AD3
B
280 284Right-handed 310
Helix 31
AD4
B
291 298Right-handed alpha
Helix 32
AD5
B
298 310Right-handed alpha
Helix 33
AD6
B
311 313Right-handed 310
Helix 34
AD7
B
314 325Right-handed alpha
Helix 35
AD8
B
334 339Right-handed alpha
Helix 36
AD9
B
341 347Right-handed alpha
Helix 37
AE1
B
386 391Right-handed alpha
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There are 6 sheets in PDB entry 5YIY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 77first strand
Strand 2
A
37 42parallel
Strand 3
A
14 17parallel
Strand 4
A
98 101parallel
Strand 5
A
126 131parallel
Strand 6
A
201 205parallel
Strand 7
B
368 369anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 255first strand
Strand 2
A
260 264anti-parallel
Strand 3
A
328 330anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 355first strand
Strand 2
A
358 363anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 369first strand
Strand 2
B
201 205anti-parallel
Strand 3
B
126 131parallel
Strand 4
B
98 101parallel
Strand 5
B
14 17parallel
Strand 6
B
37 42parallel
Strand 7
B
74 77parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 255first strand
Strand 2
B
260 264anti-parallel
Strand 3
B
328 331anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
350 353first strand
Strand 2
B
360 363anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il