Analysis of interatomic Contacts of Structural Units in PDB entry:
5YIZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5YIZ entry

There are 16 chains in PDB entry 5YIZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 321	PRO 427
D	PRO 321	PRO 427
G	GLY 320	PRO 427
J	THR 322	PRO 427
M	GLY 320	PRO 427
P	GLY 320	PRO 427
S	GLY 320	PRO 427
V	GLY 320	PRO 427
Y	GLY 320	PRO 427
b	GLY 320	PRO 427
e	GLY 320	PRO 427
h	GLY 320	PRO 427
k	GLY 320	PRO 427
n	THR 322	PRO 427
q	GLY 320	PRO 427
t	GLY 320	PRO 427

There are 13 helices in PDB entry 5YIZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	338	340	Right-handed 310
Helix 2	AA2	J	338	340	Right-handed 310
Helix 3	AA3	M	338	340	Right-handed 310
Helix 4	AA4	P	338	340	Right-handed 310
Helix 5	AA5	S	338	340	Right-handed 310
Helix 6	AA6	V	338	340	Right-handed 310
Helix 7	AA7	Y	338	340	Right-handed 310
Helix 8	AA8	b	338	340	Right-handed 310
Helix 9	AA9	e	338	340	Right-handed 310
Helix 10	AB1	h	338	340	Right-handed 310
Helix 11	AB2	n	338	340	Right-handed 310
Helix 12	AB3	q	338	340	Right-handed 310
Helix 13	AB4	q	423	425	Right-handed 310

There are 32 sheets in PDB entry 5YIZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	336	first strand
Strand 2	A	323	326	anti-parallel
Strand 3	A	425	426	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	341	first strand
Strand 2	A	362	365	anti-parallel
Strand 3	A	416	421	anti-parallel
Strand 4	A	400	407	anti-parallel
Strand 5	A	387	394	anti-parallel
Strand 6	A	371	378	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	336	first strand
Strand 2	D	323	326	anti-parallel
Strand 3	D	425	426	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	340	341	first strand
Strand 2	D	362	365	anti-parallel
Strand 3	D	416	421	anti-parallel
Strand 4	D	400	407	anti-parallel
Strand 5	D	387	394	anti-parallel
Strand 6	D	371	378	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	333	336	first strand
Strand 2	G	323	326	anti-parallel
Strand 3	G	425	426	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	362	365	first strand
Strand 2	G	416	421	anti-parallel
Strand 3	G	400	407	anti-parallel
Strand 4	G	387	394	anti-parallel
Strand 5	G	371	378	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	333	336	first strand
Strand 2	J	323	326	anti-parallel
Strand 3	J	425	426	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	362	365	first strand
Strand 2	J	416	421	anti-parallel
Strand 3	J	400	407	anti-parallel
Strand 4	J	387	394	anti-parallel
Strand 5	J	371	378	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	333	336	first strand
Strand 2	M	323	326	anti-parallel
Strand 3	M	425	426	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	362	365	first strand
Strand 2	M	416	421	anti-parallel
Strand 3	M	400	407	anti-parallel
Strand 4	M	387	394	anti-parallel
Strand 5	M	371	378	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	333	336	first strand
Strand 2	P	323	326	anti-parallel
Strand 3	P	425	426	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	362	365	first strand
Strand 2	P	416	421	anti-parallel
Strand 3	P	400	407	anti-parallel
Strand 4	P	387	394	anti-parallel
Strand 5	P	371	378	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	333	336	first strand
Strand 2	S	323	326	anti-parallel
Strand 3	S	425	426	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	362	365	first strand
Strand 2	S	416	421	anti-parallel
Strand 3	S	400	407	anti-parallel
Strand 4	S	387	394	anti-parallel
Strand 5	S	371	378	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	333	336	first strand
Strand 2	V	323	326	anti-parallel
Strand 3	V	425	426	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	362	365	first strand
Strand 2	V	416	421	anti-parallel
Strand 3	V	400	407	anti-parallel
Strand 4	V	387	394	anti-parallel
Strand 5	V	371	378	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	333	336	first strand
Strand 2	Y	323	326	anti-parallel
Strand 3	Y	425	426	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	362	365	first strand
Strand 2	Y	416	421	anti-parallel
Strand 3	Y	400	407	anti-parallel
Strand 4	Y	387	394	anti-parallel
Strand 5	Y	371	378	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	333	336	first strand
Strand 2	b	323	326	anti-parallel
Strand 3	b	425	426	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	362	365	first strand
Strand 2	b	416	421	anti-parallel
Strand 3	b	400	407	anti-parallel
Strand 4	b	387	394	anti-parallel
Strand 5	b	371	378	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	333	336	first strand
Strand 2	e	323	326	anti-parallel
Strand 3	e	425	426	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	362	365	first strand
Strand 2	e	416	421	anti-parallel
Strand 3	e	400	407	anti-parallel
Strand 4	e	387	394	anti-parallel
Strand 5	e	371	378	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	333	336	first strand
Strand 2	h	323	326	anti-parallel
Strand 3	h	425	426	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	362	365	first strand
Strand 2	h	416	421	anti-parallel
Strand 3	h	400	407	anti-parallel
Strand 4	h	387	394	anti-parallel
Strand 5	h	371	378	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	333	336	first strand
Strand 2	k	323	326	anti-parallel
Strand 3	k	425	426	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	340	341	first strand
Strand 2	k	362	365	anti-parallel
Strand 3	k	416	421	anti-parallel
Strand 4	k	400	407	anti-parallel
Strand 5	k	387	394	anti-parallel
Strand 6	k	371	378	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	333	336	first strand
Strand 2	n	323	326	anti-parallel
Strand 3	n	425	426	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	362	365	first strand
Strand 2	n	416	421	anti-parallel
Strand 3	n	400	407	anti-parallel
Strand 4	n	387	394	anti-parallel
Strand 5	n	371	378	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	323	325	first strand
Strand 2	q	333	336	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	362	365	first strand
Strand 2	q	416	421	anti-parallel
Strand 3	q	400	407	anti-parallel
Strand 4	q	387	394	anti-parallel
Strand 5	q	371	378	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	t	333	336	first strand
Strand 2	t	323	326	anti-parallel
Strand 3	t	425	426	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	t	340	341	first strand
Strand 2	t	362	365	anti-parallel
Strand 3	t	416	421	anti-parallel
Strand 4	t	400	407	anti-parallel
Strand 5	t	387	394	anti-parallel
Strand 6	t	371	378	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5YIZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5YIZ