Analysis of interatomic Contacts of Structural Units in PDB entry:
5YJ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YJ6 entry

There is 1 chain in PDB entry 5YJ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 28ASP 663
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5YJ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 53Right-handed alpha
Helix 2
AA2
A
54 57Right-handed 310
Helix 3
AA3
A
86 104Right-handed alpha
Helix 4
AA4
A
106 120Right-handed alpha
Helix 5
AA5
A
123 127Right-handed 310
Helix 6
AA6
A
129 133Right-handed 310
Helix 7
AA7
A
147 151Right-handed 310
Helix 8
AA8
A
167 176Right-handed alpha
Helix 9
AA9
A
213 217Right-handed 310
Helix 10
AB1
A
234 237Right-handed 310
Helix 11
AB2
A
253 274Right-handed alpha
Helix 12
AB3
A
276 279Right-handed 310
Helix 13
AB4
A
280 294Right-handed alpha
Helix 14
AB5
A
295 299Right-handed 310
Helix 15
AB6
A
315 320Right-handed 310
Helix 16
AB7
A
350 352Right-handed 310
Helix 17
AB8
A
353 363Right-handed alpha
Helix 18
AB9
A
364 367Right-handed 310
Helix 19
AC1
A
372 391Right-handed alpha
Helix 20
AC2
A
405 409Right-handed 310
Helix 21
AC3
A
440 458Right-handed alpha
Helix 22
AC4
A
459 461Right-handed 310
Helix 23
AC5
A
462 476Right-handed alpha
Helix 24
AC6
A
520 542Right-handed alpha
Helix 25
AC7
A
546 564Right-handed alpha
Helix 26
AC8
A
579 581Right-handed 310
Helix 27
AC9
A
582 587Right-handed alpha
Helix 28
AD1
A
610 621Right-handed 310
Helix 29
AD2
A
623 633Right-handed alpha
Helix 30
AD3
A
643 661Right-handed alpha
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There are 8 sheets in PDB entry 5YJ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
565 566anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 85first strand
Strand 2
A
185 187anti-parallel
Strand 3
A
201 204anti-parallel
Strand 4
A
220 221anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 154first strand
Strand 2
A
239 240parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 224first strand
Strand 2
A
247 251anti-parallel
Strand 3
A
329 333anti-parallel
Strand 4
A
339 342anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 348first strand
Strand 2
A
401 403anti-parallel
Strand 3
A
423 426anti-parallel
Strand 4
A
419 420anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
478 479first strand
Strand 2
A
485 494anti-parallel
Strand 3
A
511 518anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
576 577first strand
Strand 2
A
638 639anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
597 598first strand
Strand 2
A
604 605anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il