Analysis of interatomic Contacts of Structural Units in PDB entry:
5YJ7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5YJ7 entry

There are 2 chains in PDB entry 5YJ7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 21	SER 503
B	VAL 22	ALA 186

There are100 helices in PDB entry 5YJ7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	45	Right-handed alpha
Helix 2	AA2	A	61	66	Right-handed alpha
Helix 3	AA3	A	77	85	Right-handed alpha
Helix 4	AA4	A	89	93	Right-handed 310
Helix 5	AA5	A	100	116	Right-handed alpha
Helix 6	AA6	A	125	130	Right-handed alpha
Helix 7	AA7	A	138	155	Right-handed alpha
Helix 8	AA8	A	169	175	Right-handed alpha
Helix 9	AA9	A	176	179	Right-handed 310
Helix 10	AB1	A	180	199	Right-handed alpha
Helix 11	AB2	A	210	220	Right-handed alpha
Helix 12	AB3	A	233	257	Right-handed alpha
Helix 13	AB4	A	257	262	Right-handed alpha
Helix 14	AB5	A	280	295	Right-handed alpha
Helix 15	AB6	A	295	305	Right-handed alpha
Helix 16	AB7	A	308	316	Right-handed alpha
Helix 17	AB8	A	317	319	Right-handed 310
Helix 18	AB9	A	323	331	Right-handed alpha
Helix 19	AC1	A	358	363	Right-handed alpha
Helix 20	AC2	A	385	399	Right-handed alpha
Helix 21	AC3	A	415	419	Right-handed 310
Helix 22	AC4	A	420	426	Right-handed alpha
Helix 23	AC5	A	427	447	Right-handed alpha
Helix 24	AC6	A	465	472	Right-handed 310
Helix 25	AC7	A	489	503	Right-handed alpha
Helix 26	AC8	B	38	45	Right-handed alpha
Helix 27	AC9	B	61	66	Right-handed alpha
Helix 28	AD1	B	77	84	Right-handed alpha
Helix 29	AD2	B	89	93	Right-handed 310
Helix 30	AD3	B	100	116	Right-handed alpha
Helix 31	AD4	B	125	130	Right-handed alpha
Helix 32	AD5	B	138	155	Right-handed alpha
Helix 33	AD6	B	169	175	Right-handed alpha
Helix 34	AD7	B	176	179	Right-handed 310
Helix 35	AD8	B	180	199	Right-handed alpha
Helix 36	AD9	B	210	220	Right-handed alpha
Helix 37	AE1	B	233	257	Right-handed alpha
Helix 38	AE2	B	257	262	Right-handed alpha
Helix 39	AE3	B	280	295	Right-handed alpha
Helix 40	AE4	B	295	305	Right-handed alpha
Helix 41	AE5	B	308	316	Right-handed alpha
Helix 42	AE6	B	317	319	Right-handed 310
Helix 43	AE7	B	323	331	Right-handed alpha
Helix 44	AE8	B	358	363	Right-handed alpha
Helix 45	AE9	B	385	399	Right-handed alpha
Helix 46	AF1	B	415	419	Right-handed 310
Helix 47	AF2	B	420	426	Right-handed alpha
Helix 48	AF3	B	427	447	Right-handed alpha
Helix 49	AF4	B	465	472	Right-handed 310
Helix 50	AF5	B	489	502	Right-handed alpha
Helix 51	AF6	C	38	45	Right-handed alpha
Helix 52	AF7	C	61	66	Right-handed alpha
Helix 53	AF8	C	77	84	Right-handed alpha
Helix 54	AF9	C	89	93	Right-handed 310
Helix 55	AG1	C	100	115	Right-handed alpha
Helix 56	AG2	C	125	130	Right-handed alpha
Helix 57	AG3	C	138	155	Right-handed alpha
Helix 58	AG4	C	169	175	Right-handed alpha
Helix 59	AG5	C	176	179	Right-handed 310
Helix 60	AG6	C	180	199	Right-handed alpha
Helix 61	AG7	C	210	220	Right-handed alpha
Helix 62	AG8	C	233	257	Right-handed alpha
Helix 63	AG9	C	257	262	Right-handed alpha
Helix 64	AH1	C	280	295	Right-handed alpha
Helix 65	AH2	C	295	305	Right-handed alpha
Helix 66	AH3	C	308	316	Right-handed alpha
Helix 67	AH4	C	317	319	Right-handed 310
Helix 68	AH5	C	323	331	Right-handed alpha
Helix 69	AH6	C	358	363	Right-handed alpha
Helix 70	AH7	C	385	399	Right-handed alpha
Helix 71	AH8	C	415	419	Right-handed 310
Helix 72	AH9	C	420	426	Right-handed alpha
Helix 73	AI1	C	427	447	Right-handed alpha
Helix 74	AI2	C	465	472	Right-handed 310
Helix 75	AI3	C	489	504	Right-handed alpha
Helix 76	AI4	D	38	45	Right-handed alpha
Helix 77	AI5	D	61	66	Right-handed alpha
Helix 78	AI6	D	77	84	Right-handed alpha
Helix 79	AI7	D	89	93	Right-handed 310
Helix 80	AI8	D	100	116	Right-handed alpha
Helix 81	AI9	D	125	130	Right-handed alpha
Helix 82	AJ1	D	138	155	Right-handed alpha
Helix 83	AJ2	D	169	175	Right-handed alpha
Helix 84	AJ3	D	176	179	Right-handed 310
Helix 85	AJ4	D	180	199	Right-handed alpha
Helix 86	AJ5	D	210	220	Right-handed alpha
Helix 87	AJ6	D	233	257	Right-handed alpha
Helix 88	AJ7	D	257	262	Right-handed alpha
Helix 89	AJ8	D	280	295	Right-handed alpha
Helix 90	AJ9	D	295	305	Right-handed alpha
Helix 91	AK1	D	308	316	Right-handed alpha
Helix 92	AK2	D	317	319	Right-handed 310
Helix 93	AK3	D	323	331	Right-handed alpha
Helix 94	AK4	D	358	363	Right-handed alpha
Helix 95	AK5	D	385	399	Right-handed alpha
Helix 96	AK6	D	415	419	Right-handed 310
Helix 97	AK7	D	420	426	Right-handed alpha
Helix 98	AK8	D	427	447	Right-handed alpha
Helix 99	AK9	D	465	472	Right-handed 310
Helix 100	AL1	D	489	503	Right-handed alpha

There are 12 sheets in PDB entry 5YJ7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	59	first strand
Strand 2	A	119	123	parallel
Strand 3	A	158	164	parallel
Strand 4	A	204	209	parallel
Strand 5	A	264	270	parallel
Strand 6	A	337	340	parallel
Strand 7	A	403	408	parallel
Strand 8	A	451	458	parallel
Strand 9	A	55	59	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	276	first strand
Strand 2	A	344	348	parallel
Strand 3	A	366	368	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	477	479	first strand
Strand 2	A	486	488	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	59	first strand
Strand 2	B	119	123	parallel
Strand 3	B	158	164	parallel
Strand 4	B	204	209	parallel
Strand 5	B	264	270	parallel
Strand 6	B	337	340	parallel
Strand 7	B	403	408	parallel
Strand 8	B	451	458	parallel
Strand 9	B	55	59	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	276	first strand
Strand 2	B	344	348	parallel
Strand 3	B	366	368	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	477	479	first strand
Strand 2	B	486	488	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	59	first strand
Strand 2	C	119	123	parallel
Strand 3	C	158	164	parallel
Strand 4	C	204	209	parallel
Strand 5	C	264	270	parallel
Strand 6	C	337	340	parallel
Strand 7	C	403	408	parallel
Strand 8	C	451	458	parallel
Strand 9	C	55	59	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	276	first strand
Strand 2	C	344	348	parallel
Strand 3	C	366	368	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	477	479	first strand
Strand 2	C	486	488	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	59	first strand
Strand 2	D	119	123	parallel
Strand 3	D	158	164	parallel
Strand 4	D	204	209	parallel
Strand 5	D	264	270	parallel
Strand 6	D	337	340	parallel
Strand 7	D	403	408	parallel
Strand 8	D	451	458	parallel
Strand 9	D	55	59	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	276	first strand
Strand 2	D	344	348	parallel
Strand 3	D	366	368	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	477	479	first strand
Strand 2	D	486	488	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5YJ7

Analysis of interatomic Contacts of Structural Units in PDB entry:
5YJ7