Analysis of interatomic Contacts of Structural Units in PDB entry:
5YJH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YJH entry

There is 1 chain in PDB entry 5YJH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 38ALA 631
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5YJH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
100 109Right-handed alpha
Helix 2
AA2
A
110 120Right-handed alpha
Helix 3
AA3
A
122 127Right-handed alpha
Helix 4
AA4
A
138 144Right-handed alpha
Helix 5
AA5
A
146 156Right-handed alpha
Helix 6
AA6
A
159 168Right-handed alpha
Helix 7
AA7
A
236 244Right-handed alpha
Helix 8
AA8
A
247 258Right-handed alpha
Helix 9
AA9
A
260 265Right-handed 310
Helix 10
AB1
A
275 281Right-handed alpha
Helix 11
AB2
A
285 293Right-handed alpha
Helix 12
AB3
A
293 304Right-handed alpha
Helix 13
AB4
A
311 315Right-handed 310
Helix 14
AB5
A
367 371Right-handed 310
Helix 15
AB6
A
372 377Right-handed 310
Helix 16
AB7
A
378 380Right-handed 310
Helix 17
AB8
A
381 391Right-handed alpha
Helix 18
AB9
A
410 413Right-handed 310
Helix 19
AC1
A
414 419Right-handed alpha
Helix 20
AC2
A
421 431Right-handed alpha
Helix 21
AC3
A
439 443Right-handed 310
Helix 22
AC4
A
498 505Right-handed alpha
Helix 23
AC5
A
506 508Right-handed 310
Helix 24
AC6
A
509 519Right-handed alpha
Helix 25
AC7
A
521 527Right-handed alpha
Helix 26
AC8
A
537 543Right-handed alpha
Helix 27
AC9
A
546 555Right-handed alpha
Helix 28
AD1
A
555 565Right-handed alpha
Helix 29
AD2
A
573 577Right-handed 310
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There are 9 sheets in PDB entry 5YJH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 59first strand
Strand 2
A
43 49anti-parallel
Strand 3
A
73 79anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
A
94 95anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
132 137anti-parallel
Strand 3
A
221 226parallel
Strand 4
A
209 218anti-parallel
Strand 5
A
204 206anti-parallel
Strand 6
A
193 198anti-parallel
Strand 7
A
184 186anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 306first strand
Strand 2
A
269 274anti-parallel
Strand 3
A
356 361parallel
Strand 4
A
351 352anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 322first strand
Strand 2
A
328 334anti-parallel
Strand 3
A
337 340anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 434first strand
Strand 2
A
403 408anti-parallel
Strand 3
A
483 488parallel
Strand 4
A
478 479anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
448 450first strand
Strand 2
A
456 461anti-parallel
Strand 3
A
466 468anti-parallel
Strand 4
A
471 472anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
567 569first strand
Strand 2
A
531 536anti-parallel
Strand 3
A
620 624parallel
Strand 4
A
614 615anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
582 586first strand
Strand 2
A
592 598anti-parallel
Strand 3
A
601 604anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il