Analysis of interatomic Contacts of Structural Units in PDB entry:
5YJS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5YJS entry

There are 2 chains in PDB entry 5YJS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 146	PRO 535
B	ASN 146	PRO 535

There are 22 helices in PDB entry 5YJS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	151	155	Right-handed 310
Helix 2	AA2	A	171	176	Right-handed alpha
Helix 3	AA3	A	177	183	Right-handed 310
Helix 4	AA4	A	284	289	Right-handed 310
Helix 5	AA5	A	290	299	Right-handed alpha
Helix 6	AA6	A	301	309	Right-handed alpha
Helix 7	AA7	A	321	333	Right-handed alpha
Helix 8	AA8	A	371	376	Right-handed alpha
Helix 9	AA9	A	498	503	Right-handed 310
Helix 10	AB1	A	504	513	Right-handed alpha
Helix 11	AB2	A	515	525	Right-handed alpha
Helix 12	AB3	B	151	155	Right-handed 310
Helix 13	AB4	B	171	176	Right-handed alpha
Helix 14	AB5	B	177	183	Right-handed 310
Helix 15	AB6	B	284	289	Right-handed 310
Helix 16	AB7	B	290	299	Right-handed alpha
Helix 17	AB8	B	301	309	Right-handed alpha
Helix 18	AB9	B	321	334	Right-handed alpha
Helix 19	AC1	B	371	376	Right-handed alpha
Helix 20	AC2	B	498	503	Right-handed 310
Helix 21	AC3	B	504	513	Right-handed alpha
Helix 22	AC4	B	515	525	Right-handed alpha

There are 13 sheets in PDB entry 5YJS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	150	first strand
Strand 2	A	457	460	anti-parallel
Strand 3	A	402	408	anti-parallel
Strand 4	A	476	482	anti-parallel
Strand 5	A	380	386	anti-parallel
Strand 6	A	361	366	anti-parallel
Strand 7	A	356	358	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	160	first strand
Strand 2	A	164	168	anti-parallel
Strand 3	A	185	192	anti-parallel
Strand 4	A	256	263	anti-parallel
Strand 5	A	206	213	anti-parallel
Strand 6	A	235	239	anti-parallel
Strand 7	A	347	348	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	231	first strand
Strand 2	A	216	221	anti-parallel
Strand 3	A	244	249	anti-parallel
Strand 4	A	201	203	anti-parallel
Strand 5	A	273	275	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	231	first strand
Strand 2	A	216	221	anti-parallel
Strand 3	A	244	249	anti-parallel
Strand 4	A	196	198	anti-parallel
Strand 5	A	317	319	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	392	first strand
Strand 2	A	531	533	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	397	first strand
Strand 2	A	490	492	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	446	452	first strand
Strand 2	A	410	417	anti-parallel
Strand 3	A	466	471	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	150	first strand
Strand 2	B	457	460	anti-parallel
Strand 3	B	402	408	anti-parallel
Strand 4	B	476	482	anti-parallel
Strand 5	B	380	386	anti-parallel
Strand 6	B	361	366	anti-parallel
Strand 7	B	356	358	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	160	first strand
Strand 2	B	164	168	anti-parallel
Strand 3	B	185	192	anti-parallel
Strand 4	B	256	263	anti-parallel
Strand 5	B	206	213	anti-parallel
Strand 6	B	235	239	anti-parallel
Strand 7	B	347	348	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	231	first strand
Strand 2	B	216	221	anti-parallel
Strand 3	B	244	249	anti-parallel
Strand 4	B	201	203	anti-parallel
Strand 5	B	273	275	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	231	first strand
Strand 2	B	216	221	anti-parallel
Strand 3	B	244	249	anti-parallel
Strand 4	B	196	198	anti-parallel
Strand 5	B	317	319	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	446	453	first strand
Strand 2	B	410	417	anti-parallel
Strand 3	B	466	471	anti-parallel
Strand 4	B	390	397	anti-parallel
Strand 5	B	490	492	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	446	453	first strand
Strand 2	B	410	417	anti-parallel
Strand 3	B	466	471	anti-parallel
Strand 4	B	390	397	anti-parallel
Strand 5	B	531	533	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5YJS

Analysis of interatomic Contacts of Structural Units in PDB entry:
5YJS