Analysis of interatomic Contacts of Structural Units in PDB entry:
5YJW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YJW entry

There is 1 chain in PDB entry 5YJW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 33LEU 513
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5YJW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
62 72Right-handed alpha
Helix 2
AA2
A
91 97Right-handed 310
Helix 3
AA3
A
103 106Right-handed 310
Helix 4
AA4
A
111 116Right-handed alpha
Helix 5
AA5
A
187 192Right-handed alpha
Helix 6
AA6
A
197 216Right-handed alpha
Helix 7
AA7
A
222 229Right-handed alpha
Helix 8
AA8
A
237 254Right-handed alpha
Helix 9
AA9
A
254 259Right-handed alpha
Helix 10
AB1
A
259 266Right-handed alpha
Helix 11
AB2
A
282 296Right-handed alpha
Helix 12
AB3
A
344 352Right-handed alpha
Helix 13
AB4
A
353 358Right-handed 310
Helix 14
AB5
A
392 411Right-handed alpha
Helix 15
AB6
A
412 418Right-handed 310
Helix 16
AB7
A
428 434Right-handed alpha
Helix 17
AB8
A
472 486Right-handed alpha
Helix 18
AB9
A
488 505Right-handed alpha
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There are 8 sheets in PDB entry 5YJW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 41first strand
Strand 2
A
122 126anti-parallel
Strand 3
A
78 83parallel
Strand 4
A
55 59parallel
Strand 5
A
171 174parallel
Strand 6
A
378 380parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
108 110anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 133first strand
Strand 2
A
138 142anti-parallel
Strand 3
A
166 168anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 180first strand
Strand 2
A
341 342anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 194first strand
Strand 2
A
334 337parallel
Strand 3
A
230 234parallel
Strand 4
A
267 271parallel
Strand 5
A
299 301parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 309first strand
Strand 2
A
313 319anti-parallel
Strand 3
A
325 331anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 365first strand
Strand 2
A
385 386parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
445 449first strand
Strand 2
A
455 461anti-parallel
Strand 3
A
464 471anti-parallel
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