Analysis of interatomic Contacts of Structural Units in PDB entry:
5YJX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5YJX entry

There are 2 chains in PDB entry 5YJX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 28	LEU 513
B	THR 28	LEU 513

There are 36 helices in PDB entry 5YJX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	62	72	Right-handed alpha
Helix 2	AA2	A	91	97	Right-handed 310
Helix 3	AA3	A	104	106	Right-handed 310
Helix 4	AA4	A	111	116	Right-handed alpha
Helix 5	AA5	A	134	136	Right-handed 310
Helix 6	AA6	A	187	192	Right-handed alpha
Helix 7	AA7	A	197	216	Right-handed alpha
Helix 8	AA8	A	222	229	Right-handed alpha
Helix 9	AA9	A	237	254	Right-handed alpha
Helix 10	AB1	A	255	258	Right-handed 310
Helix 11	AB2	A	259	266	Right-handed alpha
Helix 12	AB3	A	282	296	Right-handed alpha
Helix 13	AB4	A	344	353	Right-handed alpha
Helix 14	AB5	A	354	360	Right-handed 310
Helix 15	AB6	A	392	409	Right-handed alpha
Helix 16	AB7	A	415	419	Right-handed 310
Helix 17	AB8	A	428	435	Right-handed alpha
Helix 18	AB9	A	471	486	Right-handed alpha
Helix 19	AC1	A	488	505	Right-handed alpha
Helix 20	AC2	B	62	72	Right-handed alpha
Helix 21	AC3	B	91	97	Right-handed 310
Helix 22	AC4	B	104	106	Right-handed 310
Helix 23	AC5	B	111	116	Right-handed alpha
Helix 24	AC6	B	197	216	Right-handed alpha
Helix 25	AC7	B	222	229	Right-handed alpha
Helix 26	AC8	B	237	254	Right-handed alpha
Helix 27	AC9	B	255	258	Right-handed 310
Helix 28	AD1	B	259	266	Right-handed alpha
Helix 29	AD2	B	282	296	Right-handed alpha
Helix 30	AD3	B	344	351	Right-handed alpha
Helix 31	AD4	B	352	360	Right-handed 310
Helix 32	AD5	B	392	412	Right-handed alpha
Helix 33	AD6	B	413	417	Right-handed 310
Helix 34	AD7	B	428	434	Right-handed alpha
Helix 35	AD8	B	471	486	Right-handed alpha
Helix 36	AD9	B	488	505	Right-handed alpha

There are 16 sheets in PDB entry 5YJX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	42	first strand
Strand 2	A	122	125	anti-parallel
Strand 3	A	78	82	parallel
Strand 4	A	55	59	parallel
Strand 5	A	171	174	parallel
Strand 6	A	378	380	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	108	110	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	133	first strand
Strand 2	A	138	141	anti-parallel
Strand 3	A	166	168	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	180	first strand
Strand 2	A	341	342	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	301	first strand
Strand 2	A	267	271	parallel
Strand 3	A	230	234	parallel
Strand 4	A	334	337	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	309	first strand
Strand 2	A	313	318	anti-parallel
Strand 3	A	326	331	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	365	first strand
Strand 2	A	385	386	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	451	first strand
Strand 2	A	454	456	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	42	first strand
Strand 2	B	122	125	anti-parallel
Strand 3	B	79	82	parallel
Strand 4	B	56	59	parallel
Strand 5	B	171	174	parallel
Strand 6	B	378	380	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	108	110	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	133	first strand
Strand 2	B	138	141	anti-parallel
Strand 3	B	166	168	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	194	first strand
Strand 2	B	334	337	parallel
Strand 3	B	230	234	parallel
Strand 4	B	267	271	parallel
Strand 5	B	298	301	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	309	first strand
Strand 2	B	313	319	anti-parallel
Strand 3	B	325	331	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	365	first strand
Strand 2	B	385	386	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	447	451	first strand
Strand 2	B	454	457	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	459	461	first strand
Strand 2	B	464	467	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5YJX

Analysis of interatomic Contacts of Structural Units in PDB entry:
5YJX