Analysis of interatomic Contacts of Structural Units in PDB entry:
5YJY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5YJY entry

There are 2 chains in PDB entry 5YJY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 29	LEU 513
B	THR 28	LEU 513

There are 30 helices in PDB entry 5YJY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	64	72	Right-handed alpha
Helix 2	AA2	A	91	97	Right-handed 310
Helix 3	AA3	A	111	116	Right-handed alpha
Helix 4	AA4	A	187	192	Right-handed alpha
Helix 5	AA5	A	197	217	Right-handed alpha
Helix 6	AA6	A	222	229	Right-handed alpha
Helix 7	AA7	A	237	254	Right-handed alpha
Helix 8	AA8	A	259	266	Right-handed alpha
Helix 9	AA9	A	282	297	Right-handed alpha
Helix 10	AB1	A	344	353	Right-handed alpha
Helix 11	AB2	A	355	360	Right-handed 310
Helix 12	AB3	A	392	409	Right-handed alpha
Helix 13	AB4	A	414	418	Right-handed 310
Helix 14	AB5	A	428	434	Right-handed alpha
Helix 15	AB6	A	471	486	Right-handed alpha
Helix 16	AB7	A	488	505	Right-handed alpha
Helix 17	AB8	B	62	72	Right-handed alpha
Helix 18	AB9	B	91	97	Right-handed 310
Helix 19	AC1	B	111	116	Right-handed alpha
Helix 20	AC2	B	187	192	Right-handed alpha
Helix 21	AC3	B	197	217	Right-handed alpha
Helix 22	AC4	B	222	229	Right-handed alpha
Helix 23	AC5	B	237	254	Right-handed alpha
Helix 24	AC6	B	259	266	Right-handed alpha
Helix 25	AC7	B	282	296	Right-handed alpha
Helix 26	AC8	B	344	353	Right-handed alpha
Helix 27	AC9	B	392	413	Right-handed alpha
Helix 28	AD1	B	428	434	Right-handed alpha
Helix 29	AD2	B	470	486	Right-handed alpha
Helix 30	AD3	B	488	505	Right-handed alpha

There are 16 sheets in PDB entry 5YJY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	41	first strand
Strand 2	A	122	126	anti-parallel
Strand 3	A	78	82	parallel
Strand 4	A	55	59	parallel
Strand 5	A	171	174	parallel
Strand 6	A	378	380	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	108	110	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	133	first strand
Strand 2	A	138	142	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	180	first strand
Strand 2	A	341	343	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	299	301	first strand
Strand 2	A	267	271	parallel
Strand 3	A	230	234	parallel
Strand 4	A	334	337	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	310	first strand
Strand 2	A	313	318	anti-parallel
Strand 3	A	328	331	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	365	first strand
Strand 2	A	385	386	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	446	449	first strand
Strand 2	A	455	458	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	41	first strand
Strand 2	B	122	125	anti-parallel
Strand 3	B	78	82	parallel
Strand 4	B	55	59	parallel
Strand 5	B	171	174	parallel
Strand 6	B	378	380	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	108	110	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	133	first strand
Strand 2	B	138	141	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	180	first strand
Strand 2	B	341	343	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	299	301	first strand
Strand 2	B	267	271	parallel
Strand 3	B	230	234	parallel
Strand 4	B	334	337	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	309	first strand
Strand 2	B	313	318	anti-parallel
Strand 3	B	328	331	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	365	first strand
Strand 2	B	385	386	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	446	449	first strand
Strand 2	B	455	458	anti-parallel
Strand 3	B	468	469	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5YJY

Analysis of interatomic Contacts of Structural Units in PDB entry:
5YJY