Analysis of interatomic Contacts of Structural Units in PDB entry:
5YKE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YKE entry

There are 8 chains in PDB entry 5YKE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 46ALA 178
B
 ASN 24THR 1321
C
 HIS 46ALA 178
D
 ASN 24THR 1321
E
 HIS 46ALA 178
F
 ASN 24THR 1321
G
 HIS 46ALA 178
H
 ASN 24THR 1321
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are136 helices in PDB entry 5YKE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 58Right-handed alpha
Helix 2
AA2
A
58 64Right-handed alpha
Helix 3
AA3
A
67 98Right-handed alpha
Helix 4
AA4
A
116 129Right-handed alpha
Helix 5
AA5
A
142 172Right-handed alpha
Helix 6
AA6
A
174 178Right-handed 310
Helix 7
AA7
B
25 52Right-handed alpha
Helix 8
AA8
B
70 96Right-handed alpha
Helix 9
AA9
B
104 130Right-handed alpha
Helix 10
AB1
B
133 160Right-handed alpha
Helix 11
AB2
B
168 193Right-handed alpha
Helix 12
AB3
B
207 212Right-handed alpha
Helix 13
AB4
B
225 230Right-handed alpha
Helix 14
AB5
B
232 243Right-handed alpha
Helix 15
AB6
B
258 275Right-handed alpha
Helix 16
AB7
B
284 329Right-handed alpha
Helix 17
AB8
B
355 402Right-handed alpha
Helix 18
AB9
B
412 423Right-handed alpha
Helix 19
AC1
B
423 457Right-handed alpha
Helix 20
AC2
B
457 503Right-handed alpha
Helix 21
AC3
B
505 512Right-handed alpha
Helix 22
AC4
B
514 560Right-handed alpha
Helix 23
AC5
B
572 615Right-handed alpha
Helix 24
AC6
B
997 1007Right-handed alpha
Helix 25
AC7
B
1009 1039Right-handed alpha
Helix 26
AC8
B
1061 1107Right-handed alpha
Helix 27
AC9
B
1109 1116Right-handed alpha
Helix 28
AD1
B
1117 1127Right-handed alpha
Helix 29
AD2
B
1127 1161Right-handed alpha
Helix 30
AD3
B
1161 1210Right-handed alpha
Helix 31
AD4
B
1210 1218Right-handed alpha
Helix 32
AD5
B
1219 1271Right-handed alpha
Helix 33
AD6
B
1277 1289Right-handed alpha
Helix 34
AD7
B
1290 1320Right-handed alpha
Helix 35
AD8
C
53 58Right-handed alpha
Helix 36
AD9
C
58 64Right-handed alpha
Helix 37
AE1
C
67 98Right-handed alpha
Helix 38
AE2
C
116 129Right-handed alpha
Helix 39
AE3
C
142 172Right-handed alpha
Helix 40
AE4
C
174 178Right-handed 310
Helix 41
AE5
D
25 52Right-handed alpha
Helix 42
AE6
D
70 96Right-handed alpha
Helix 43
AE7
D
104 130Right-handed alpha
Helix 44
AE8
D
133 160Right-handed alpha
Helix 45
AE9
D
168 193Right-handed alpha
Helix 46
AF1
D
207 212Right-handed alpha
Helix 47
AF2
D
225 230Right-handed alpha
Helix 48
AF3
D
232 243Right-handed alpha
Helix 49
AF4
D
258 275Right-handed alpha
Helix 50
AF5
D
284 329Right-handed alpha
Helix 51
AF6
D
355 402Right-handed alpha
Helix 52
AF7
D
412 423Right-handed alpha
Helix 53
AF8
D
423 457Right-handed alpha
Helix 54
AF9
D
457 503Right-handed alpha
Helix 55
AG1
D
505 512Right-handed alpha
Helix 56
AG2
D
514 560Right-handed alpha
Helix 57
AG3
D
572 615Right-handed alpha
Helix 58
AG4
D
997 1007Right-handed alpha
Helix 59
AG5
D
1009 1039Right-handed alpha
Helix 60
AG6
D
1061 1107Right-handed alpha
Helix 61
AG7
D
1109 1116Right-handed alpha
Helix 62
AG8
D
1117 1127Right-handed alpha
Helix 63
AG9
D
1127 1161Right-handed alpha
Helix 64
AH1
D
1161 1210Right-handed alpha
Helix 65
AH2
D
1210 1218Right-handed alpha
Helix 66
AH3
D
1219 1271Right-handed alpha
Helix 67
AH4
D
1277 1289Right-handed alpha
Helix 68
AH5
D
1290 1320Right-handed alpha
Helix 69
AH6
E
53 58Right-handed alpha
Helix 70
AH7
E
58 64Right-handed alpha
Helix 71
AH8
E
67 98Right-handed alpha
Helix 72
AH9
E
116 129Right-handed alpha
Helix 73
AI1
E
142 172Right-handed alpha
Helix 74
AI2
E
174 178Right-handed 310
Helix 75
AI3
F
25 52Right-handed alpha
Helix 76
AI4
F
70 96Right-handed alpha
Helix 77
AI5
F
104 130Right-handed alpha
Helix 78
AI6
F
133 160Right-handed alpha
Helix 79
AI7
F
168 193Right-handed alpha
Helix 80
AI8
F
207 212Right-handed alpha
Helix 81
AI9
F
225 230Right-handed alpha
Helix 82
AJ1
F
232 243Right-handed alpha
Helix 83
AJ2
F
258 275Right-handed alpha
Helix 84
AJ3
F
284 329Right-handed alpha
Helix 85
AJ4
F
355 402Right-handed alpha
Helix 86
AJ5
F
412 423Right-handed alpha
Helix 87
AJ6
F
423 457Right-handed alpha
Helix 88
AJ7
F
457 503Right-handed alpha
Helix 89
AJ8
F
505 512Right-handed alpha
Helix 90
AJ9
F
514 560Right-handed alpha
Helix 91
AK1
F
572 615Right-handed alpha
Helix 92
AK2
F
997 1007Right-handed alpha
Helix 93
AK3
F
1009 1039Right-handed alpha
Helix 94
AK4
F
1061 1107Right-handed alpha
Helix 95
AK5
F
1109 1116Right-handed alpha
Helix 96
AK6
F
1117 1127Right-handed alpha
Helix 97
AK7
F
1127 1161Right-handed alpha
Helix 98
AK8
F
1161 1210Right-handed alpha
Helix 99
AK9
F
1210 1218Right-handed alpha
Helix 100
AL1
F
1219 1271Right-handed alpha
Helix 101
AL2
F
1277 1289Right-handed alpha
Helix 102
AL3
F
1290 1320Right-handed alpha
Helix 103
AL4
G
53 58Right-handed alpha
Helix 104
AL5
G
58 64Right-handed alpha
Helix 105
AL6
G
67 98Right-handed alpha
Helix 106
AL7
G
116 129Right-handed alpha
Helix 107
AL8
G
142 172Right-handed alpha
Helix 108
AL9
G
174 178Right-handed 310
Helix 109
AM1
H
25 52Right-handed alpha
Helix 110
AM2
H
70 96Right-handed alpha
Helix 111
AM3
H
104 130Right-handed alpha
Helix 112
AM4
H
133 160Right-handed alpha
Helix 113
AM5
H
168 193Right-handed alpha
Helix 114
AM6
H
207 212Right-handed alpha
Helix 115
AM7
H
225 230Right-handed alpha
Helix 116
AM8
H
232 243Right-handed alpha
Helix 117
AM9
H
258 275Right-handed alpha
Helix 118
AN1
H
284 329Right-handed alpha
Helix 119
AN2
H
355 402Right-handed alpha
Helix 120
AN3
H
412 423Right-handed alpha
Helix 121
AN4
H
423 457Right-handed alpha
Helix 122
AN5
H
457 503Right-handed alpha
Helix 123
AN6
H
505 512Right-handed alpha
Helix 124
AN7
H
514 560Right-handed alpha
Helix 125
AN8
H
572 615Right-handed alpha
Helix 126
AN9
H
997 1007Right-handed alpha
Helix 127
AO1
H
1009 1039Right-handed alpha
Helix 128
AO2
H
1061 1107Right-handed alpha
Helix 129
AO3
H
1109 1116Right-handed alpha
Helix 130
AO4
H
1117 1127Right-handed alpha
Helix 131
AO5
H
1127 1161Right-handed alpha
Helix 132
AO6
H
1161 1210Right-handed alpha
Helix 133
AO7
H
1210 1218Right-handed alpha
Helix 134
AO8
H
1219 1271Right-handed alpha
Helix 135
AO9
H
1277 1289Right-handed alpha
Helix 136
AP1
H
1290 1320Right-handed alpha
Back to top of page
There are no sheets in PDB entry 5YKE
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il