Analysis of interatomic Contacts of Structural Units in PDB entry:
5YKT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YKT entry

There are 2 chains in PDB entry 5YKT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 5LEU 457
B
 PHE 5LEU 457
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 5YKT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 27Right-handed alpha
Helix 2
AA2
A
27 38Right-handed alpha
Helix 3
AA3
A
47 53Right-handed 310
Helix 4
AA4
A
93 105Right-handed alpha
Helix 5
AA5
A
114 129Right-handed alpha
Helix 6
AA6
A
138 155Right-handed alpha
Helix 7
AA7
A
170 173Right-handed 310
Helix 8
AA8
A
195 199Right-handed alpha
Helix 9
AA9
A
207 216Right-handed alpha
Helix 10
AB1
A
240 252Right-handed alpha
Helix 11
AB2
A
262 267Right-handed 310
Helix 12
AB3
A
269 276Right-handed alpha
Helix 13
AB4
A
285 290Right-handed 310
Helix 14
AB5
A
300 311Right-handed alpha
Helix 15
AB6
A
332 346Right-handed alpha
Helix 16
AB7
A
348 374Right-handed alpha
Helix 17
AB8
A
397 403Right-handed alpha
Helix 18
AB9
A
406 419Right-handed alpha
Helix 19
AC1
A
438 457Right-handed alpha
Helix 20
AC2
B
8 27Right-handed alpha
Helix 21
AC3
B
27 38Right-handed alpha
Helix 22
AC4
B
47 53Right-handed 310
Helix 23
AC5
B
93 105Right-handed alpha
Helix 24
AC6
B
114 129Right-handed alpha
Helix 25
AC7
B
138 155Right-handed alpha
Helix 26
AC8
B
170 173Right-handed 310
Helix 27
AC9
B
195 199Right-handed alpha
Helix 28
AD1
B
207 216Right-handed alpha
Helix 29
AD2
B
240 252Right-handed alpha
Helix 30
AD3
B
262 267Right-handed 310
Helix 31
AD4
B
269 276Right-handed alpha
Helix 32
AD5
B
285 290Right-handed 310
Helix 33
AD6
B
300 311Right-handed alpha
Helix 34
AD7
B
332 346Right-handed alpha
Helix 35
AD8
B
348 374Right-handed alpha
Helix 36
AD9
B
397 403Right-handed alpha
Helix 37
AE1
B
406 419Right-handed alpha
Helix 38
AE2
B
438 457Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 5YKT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
68 71anti-parallel
Strand 3
A
76 79anti-parallel
Strand 4
A
422 423parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 136first strand
Strand 2
A
295 299anti-parallel
Strand 3
A
281 284anti-parallel
Strand 4
A
255 259parallel
Strand 5
A
220 225parallel
Strand 6
A
158 162parallel
Strand 7
A
200 203parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
183 185anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 382first strand
Strand 2
A
385 389anti-parallel
Strand 3
A
430 432anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 65first strand
Strand 2
B
68 71anti-parallel
Strand 3
B
76 79anti-parallel
Strand 4
B
422 423parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 136first strand
Strand 2
B
295 299anti-parallel
Strand 3
B
281 284anti-parallel
Strand 4
B
255 259parallel
Strand 5
B
220 225parallel
Strand 6
B
158 162parallel
Strand 7
B
200 203parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 177first strand
Strand 2
B
183 185anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
378 382first strand
Strand 2
B
385 389anti-parallel
Strand 3
B
430 432anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il