Analysis of interatomic Contacts of Structural Units in PDB entry:
5YKV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YKV entry

There are 8 chains in PDB entry 5YKV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3ASN 126
B
 PRO 2ASN 126
C
 THR 3ASN 126
D
 PRO 2ASN 126
E
 PRO 2ASN 126
F
 THR 3ASN 126
G
 PRO 2ASN 126
H
 THR 3ASN 126
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5YKV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 10Right-handed 310
Helix 2
AA2
B
6 10Right-handed 310
Helix 3
AA3
C
6 10Right-handed 310
Helix 4
AA4
D
6 10Right-handed 310
Helix 5
AA5
E
6 10Right-handed 310
Helix 6
AA6
F
6 10Right-handed 310
Helix 7
AA7
G
6 10Right-handed 310
Helix 8
AA8
H
6 10Right-handed 310
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There are 9 sheets in PDB entry 5YKV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 19first strand
Strand 2
A
115 122anti-parallel
Strand 3
A
42 52anti-parallel
Strand 4
B
80 90anti-parallel
Strand 5
B
70 76anti-parallel
Strand 6
B
58 64anti-parallel
Strand 7
B
97 105anti-parallel
Strand 8
B
27 34anti-parallel
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There are 16 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 19first strand
Strand 2
B
115 122anti-parallel
Strand 3
B
42 52anti-parallel
Strand 4
A
80 90anti-parallel
Strand 5
A
70 76anti-parallel
Strand 6
A
58 64anti-parallel
Strand 7
A
97 105anti-parallel
Strand 8
A
27 34anti-parallel
Strand 9
D
27 34anti-parallel
Strand 10
D
97 105anti-parallel
Strand 11
D
58 64anti-parallel
Strand 12
D
70 76anti-parallel
Strand 13
D
80 90anti-parallel
Strand 14
D
42 52anti-parallel
Strand 15
D
115 122anti-parallel
Strand 16
D
11 19anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 19first strand
Strand 2
A
115 122anti-parallel
Strand 3
A
42 52anti-parallel
Strand 4
A
80 90anti-parallel
Strand 5
B
42 52anti-parallel
Strand 6
B
80 90anti-parallel
Strand 7
B
70 76anti-parallel
Strand 8
B
58 64anti-parallel
Strand 9
B
97 105anti-parallel
Strand 10
B
27 34anti-parallel
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There are 18 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 19first strand
Strand 2
C
115 122anti-parallel
Strand 3
C
42 52anti-parallel
Strand 4
C
80 90anti-parallel
Strand 5
D
42 52anti-parallel
Strand 6
D
80 90anti-parallel
Strand 7
D
70 76anti-parallel
Strand 8
D
58 64anti-parallel
Strand 9
D
97 105anti-parallel
Strand 10
D
27 34anti-parallel
Strand 11
A
27 34anti-parallel
Strand 12
A
97 105anti-parallel
Strand 13
A
58 64anti-parallel
Strand 14
A
70 76anti-parallel
Strand 15
A
80 90anti-parallel
Strand 16
B
42 52anti-parallel
Strand 17
B
115 122anti-parallel
Strand 18
B
11 19anti-parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 34first strand
Strand 2
C
97 105anti-parallel
Strand 3
C
58 64anti-parallel
Strand 4
C
70 76anti-parallel
Strand 5
C
80 90anti-parallel
Strand 6
C
42 52anti-parallel
Strand 7
D
80 90anti-parallel
Strand 8
D
42 52anti-parallel
Strand 9
D
115 122anti-parallel
Strand 10
D
11 19anti-parallel
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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 19first strand
Strand 2
E
115 122anti-parallel
Strand 3
E
42 52anti-parallel
Strand 4
E
80 90anti-parallel
Strand 5
F
42 52anti-parallel
Strand 6
F
80 90anti-parallel
Strand 7
F
70 76anti-parallel
Strand 8
F
58 64anti-parallel
Strand 9
F
97 105anti-parallel
Strand 10
F
27 34anti-parallel
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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
27 34first strand
Strand 2
E
97 105anti-parallel
Strand 3
E
58 64anti-parallel
Strand 4
E
70 76anti-parallel
Strand 5
E
80 90anti-parallel
Strand 6
E
42 52anti-parallel
Strand 7
F
80 90anti-parallel
Strand 8
F
42 52anti-parallel
Strand 9
F
114 122anti-parallel
Strand 10
F
11 20anti-parallel
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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
11 19first strand
Strand 2
G
115 122anti-parallel
Strand 3
G
42 52anti-parallel
Strand 4
G
80 90anti-parallel
Strand 5
H
42 52anti-parallel
Strand 6
H
80 90anti-parallel
Strand 7
H
70 76anti-parallel
Strand 8
H
58 64anti-parallel
Strand 9
H
97 105anti-parallel
Strand 10
H
27 34anti-parallel
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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
27 34first strand
Strand 2
G
97 105anti-parallel
Strand 3
G
58 64anti-parallel
Strand 4
G
70 76anti-parallel
Strand 5
G
80 90anti-parallel
Strand 6
G
42 52anti-parallel
Strand 7
H
80 90anti-parallel
Strand 8
H
42 52anti-parallel
Strand 9
H
115 122anti-parallel
Strand 10
H
11 19anti-parallel
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