Analysis of interatomic Contacts of Structural Units in PDB entry:
5YL0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YL0 entry

There are 4 chains in PDB entry 5YL0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 8ALA 117
B
 ASP 7THR 118
C
 ASP 7THR 118
D
 ASP 7THR 118
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 5YL0

There are 7 sheets in PDB entry 5YL0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 15first strand
Strand 2
A
111 116anti-parallel
Strand 3
A
38 48anti-parallel
Strand 4
A
85 88anti-parallel
Strand 5
A
67 68anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 15first strand
Strand 2
A
111 116anti-parallel
Strand 3
A
38 48anti-parallel
Strand 4
B
79 83anti-parallel
Strand 5
B
70 73anti-parallel
Strand 6
B
58 63anti-parallel
Strand 7
B
95 101anti-parallel
Strand 8
B
26 30anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 30first strand
Strand 2
A
95 101anti-parallel
Strand 3
A
58 63anti-parallel
Strand 4
A
70 73anti-parallel
Strand 5
A
79 82anti-parallel
Strand 6
B
38 48anti-parallel
Strand 7
B
111 117anti-parallel
Strand 8
B
8 15anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 30first strand
Strand 2
A
95 101anti-parallel
Strand 3
A
58 63anti-parallel
Strand 4
A
70 73anti-parallel
Strand 5
A
79 82anti-parallel
Strand 6
B
38 48anti-parallel
Strand 7
B
85 88anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 15first strand
Strand 2
C
111 117anti-parallel
Strand 3
C
38 48anti-parallel
Strand 4
C
85 88anti-parallel
Strand 5
C
66 68anti-parallel
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There are 11 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 30first strand
Strand 2
C
95 101anti-parallel
Strand 3
C
58 63anti-parallel
Strand 4
C
70 73anti-parallel
Strand 5
C
79 82anti-parallel
Strand 6
D
38 48anti-parallel
Strand 7
D
79 88anti-parallel
Strand 8
D
66 73anti-parallel
Strand 9
D
58 63anti-parallel
Strand 10
D
95 101anti-parallel
Strand 11
D
26 30anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 15first strand
Strand 2
D
111 117anti-parallel
Strand 3
D
38 48anti-parallel
Strand 4
D
79 88anti-parallel
Strand 5
C
38 48anti-parallel
Strand 6
C
85 88anti-parallel
Strand 7
C
66 68anti-parallel
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