Analysis of interatomic Contacts of Structural Units in PDB entry:
5YL7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YL7 entry

There are 2 chains in PDB entry 5YL7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 145SER 483
B
 UNK 2UNK 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5YL7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
151 154Right-handed 310
Helix 2
AA2
A
155 160Right-handed alpha
Helix 3
AA3
A
166 172Right-handed alpha
Helix 4
AA4
A
194 198Right-handed 310
Helix 5
AA5
A
207 212Right-handed alpha
Helix 6
AA6
A
243 254Right-handed alpha
Helix 7
AA7
A
283 295Right-handed alpha
Helix 8
AA8
A
323 336Right-handed alpha
Helix 9
AA9
A
350 352Right-handed 310
Helix 10
AB1
A
423 442Right-handed alpha
Helix 11
AB2
A
446 457Right-handed alpha
Helix 12
AB3
A
474 483Right-handed alpha
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There are 3 sheets in PDB entry 5YL7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
270 275parallel
Strand 3
A
180 185parallel
Strand 4
A
311 314parallel
Strand 5
A
339 343parallel
Strand 6
A
363 368parallel
Strand 7
A
386 389parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 319first strand
Strand 2
A
354 355anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 407first strand
Strand 2
A
416 421anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il