Analysis of interatomic Contacts of Structural Units in PDB entry:
5YLC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YLC entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 2 chains in PDB entry 5YLC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2SER 69
A
 ALA 71HIS 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 5YLC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 42Right-handed 310
Helix 2
AA2
A
50 54Right-handed 310
Helix 3
AA3
A
69 78Right-handed alpha
Helix 4
AA4
A
87 94Right-handed 310
Helix 5
AA5
A
96 104Right-handed alpha
Helix 6
AA6
A
125 127Right-handed 310
Helix 7
AA7
A
150 156Right-handed 310
Helix 8
AA8
A
157 165Right-handed alpha
Helix 9
AA9
A
183 187Right-handed 310
Helix 10
AB1
A
189 193Right-handed 310
Helix 11
AB2
A
203 207Right-handed 310
Helix 12
AB3
A
208 236Right-handed alpha
Helix 13
AB4
A
257 259Right-handed 310
Helix 14
AB5
A
271 275Right-handed 310
Helix 15
AB6
A
285 288Right-handed 310
Helix 16
AB7
A
302 311Right-handed alpha
Helix 17
AB8
A
315 319Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 5YLC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 13first strand
Strand 2
A
313 314anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
279 283anti-parallel
Strand 3
A
242 249anti-parallel
Strand 4
A
23 30parallel
Strand 5
A
170 175parallel
Strand 6
A
107 112parallel
Strand 7
A
129 131parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
298 299parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 255first strand
Strand 2
A
261 262anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il