Analysis of interatomic Contacts of Structural Units in PDB entry:
5YLH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YLH entry

There are 2 chains in PDB entry 5YLH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 309
B
 MET 1ARG 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5YLH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 19Right-handed 310
Helix 2
AA2
A
20 35Right-handed alpha
Helix 3
AA3
A
64 78Right-handed alpha
Helix 4
AA4
A
95 99Right-handed 310
Helix 5
AA5
A
111 133Right-handed alpha
Helix 6
AA6
A
150 165Right-handed alpha
Helix 7
AA7
A
183 187Right-handed 310
Helix 8
AA8
A
200 213Right-handed alpha
Helix 9
AA9
A
246 263Right-handed alpha
Helix 10
AB1
A
281 288Right-handed 310
Helix 11
AB2
A
296 309Right-handed alpha
Helix 12
AB3
B
20 35Right-handed alpha
Helix 13
AB4
B
64 77Right-handed alpha
Helix 14
AB5
B
95 99Right-handed 310
Helix 15
AB6
B
111 133Right-handed alpha
Helix 16
AB7
B
144 148Right-handed 310
Helix 17
AB8
B
150 163Right-handed alpha
Helix 18
AB9
B
183 187Right-handed 310
Helix 19
AC1
B
200 213Right-handed alpha
Helix 20
AC2
B
231 235Right-handed 310
Helix 21
AC3
B
246 263Right-handed alpha
Helix 22
AC4
B
281 288Right-handed 310
Helix 23
AC5
B
296 308Right-handed alpha
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There are 2 sheets in PDB entry 5YLH. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 9first strand
Strand 2
A
38 47parallel
Strand 3
A
81 90parallel
Strand 4
A
137 142parallel
Strand 5
A
168 173parallel
Strand 6
A
189 193parallel
Strand 7
A
219 224parallel
Strand 8
A
267 275parallel
Strand 9
A
4 9parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 9first strand
Strand 2
B
38 47parallel
Strand 3
B
81 90parallel
Strand 4
B
137 142parallel
Strand 5
B
168 173parallel
Strand 6
B
189 193parallel
Strand 7
B
219 224parallel
Strand 8
B
267 275parallel
Strand 9
B
4 9parallel
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