Analysis of interatomic Contacts of Structural Units in PDB entry:
5YLO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YLO entry

There is 1 chain in PDB entry 5YLO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 235
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5YLO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 26Right-handed 310
Helix 2
AA2
A
30 47Right-handed alpha
Helix 3
AA3
A
67 77Right-handed alpha
Helix 4
AA4
A
84 98Right-handed alpha
Helix 5
AA5
A
113 121Right-handed alpha
Helix 6
AA6
A
145 157Right-handed alpha
Helix 7
AA7
A
157 167Right-handed alpha
Helix 8
AA8
A
173 179Right-handed alpha
Helix 9
AA9
A
187 189Right-handed 310
Helix 10
AB1
A
190 205Right-handed alpha
Helix 11
AB2
A
206 221Right-handed alpha
Helix 12
AB3
A
224 233Right-handed alpha
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There are 2 sheets in PDB entry 5YLO. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 12first strand
Strand 2
A
15 20anti-parallel
Strand 3
A
52 56parallel
Strand 4
A
103 107parallel
Strand 5
A
124 128parallel
Strand 6
A
184 186parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
132 134parallel
Strand 3
A
171 172anti-parallel
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