Analysis of interatomic Contacts of Structural Units in PDB entry:
5YLU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YLU entry

There are 3 chains in PDB entry 5YLU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 48SER 384
A
 LYS 386GLY 1024
B
 LEU 34LYS 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 5YLU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 55Right-handed 310
Helix 2
AA2
A
56 65Right-handed alpha
Helix 3
AA3
A
73 85Right-handed alpha
Helix 4
AA4
A
96 103Right-handed alpha
Helix 5
AA5
A
104 106Right-handed 310
Helix 6
AA6
A
107 130Right-handed alpha
Helix 7
AA7
A
136 169Right-handed alpha
Helix 8
AA8
A
192 194Right-handed 310
Helix 9
AA9
A
270 273Right-handed 310
Helix 10
AB1
A
274 283Right-handed alpha
Helix 11
AB2
A
291 322Right-handed alpha
Helix 12
AB3
A
325 340Right-handed alpha
Helix 13
AB4
A
344 363Right-handed alpha
Helix 14
AB5
A
371 379Right-handed alpha
Helix 15
AB6
A
424 437Right-handed alpha
Helix 16
AB7
A
450 454Right-handed 310
Helix 17
AB8
A
459 473Right-handed alpha
Helix 18
AB9
A
475 483Right-handed alpha
Helix 19
AC1
A
519 526Right-handed alpha
Helix 20
AC2
A
540 557Right-handed alpha
Helix 21
AC3
A
607 618Right-handed alpha
Helix 22
AC4
A
629 640Right-handed alpha
Helix 23
AC5
A
649 658Right-handed alpha
Helix 24
AC6
A
660 664Right-handed 310
Helix 25
AC7
A
665 669Right-handed 310
Helix 26
AC8
A
676 681Right-handed alpha
Helix 27
AC9
A
683 694Right-handed alpha
Helix 28
AD1
A
703 717Right-handed alpha
Helix 29
AD2
A
727 729Right-handed 310
Helix 30
AD3
A
730 737Right-handed alpha
Helix 31
AD4
A
748 755Right-handed alpha
Helix 32
AD5
A
765 791Right-handed alpha
Helix 33
AD6
A
791 805Right-handed alpha
Helix 34
AD7
A
812 822Right-handed alpha
Helix 35
AD8
A
824 831Right-handed alpha
Helix 36
AD9
A
832 834Right-handed 310
Helix 37
AE1
A
839 843Right-handed 310
Helix 38
AE2
A
855 865Right-handed alpha
Helix 39
AE3
A
865 884Right-handed alpha
Helix 40
AE4
A
888 893Right-handed alpha
Helix 41
AE5
A
895 901Right-handed alpha
Helix 42
AE6
A
916 946Right-handed alpha
Helix 43
AE7
A
952 957Right-handed alpha
Helix 44
AE8
A
961 981Right-handed alpha
Helix 45
AE9
A
983 988Right-handed alpha
Helix 46
AF1
A
1001 1021Right-handed alpha
Helix 47
AF2
B
36 66Right-handed alpha
Helix 48
AF3
B
103 118Right-handed alpha
Helix 49
AF4
B
119 120Right-handed 310
Helix 50
AF5
B
121 126Right-handed 310
Helix 51
AF6
B
155 163Right-handed 310
Helix 52
AF7
B
225 229Right-handed 310
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There are 9 sheets in PDB entry 5YLU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 190first strand
Strand 2
A
177 182anti-parallel
Strand 3
A
199 203anti-parallel
Strand 4
A
257 269anti-parallel
Strand 5
A
211 223anti-parallel
Strand 6
A
234 236anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 190first strand
Strand 2
A
177 182anti-parallel
Strand 3
A
199 203anti-parallel
Strand 4
A
257 269anti-parallel
Strand 5
A
211 223anti-parallel
Strand 6
A
251 252anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 367first strand
Strand 2
A
757 759anti-parallel
Strand 3
A
739 743parallel
Strand 4
A
721 725parallel
Strand 5
A
381 384parallel
Strand 6
A
621 625parallel
Strand 7
A
696 700parallel
Strand 8
A
671 675parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 408first strand
Strand 2
A
396 401anti-parallel
Strand 3
A
592 601anti-parallel
Strand 4
A
560 569anti-parallel
Strand 5
A
512 518anti-parallel
Strand 6
A
497 503anti-parallel
Strand 7
A
485 489anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 408first strand
Strand 2
A
396 401anti-parallel
Strand 3
A
592 601anti-parallel
Strand 4
A
527 532parallel
Strand 5
A
535 538anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 442first strand
Strand 2
A
456 457anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
907 908first strand
Strand 2
A
914 915anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 85first strand
Strand 2
B
178 183anti-parallel
Strand 3
B
244 249anti-parallel
Strand 4
B
215 218anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 99first strand
Strand 2
B
283 289parallel
Strand 3
B
258 265anti-parallel
Strand 4
B
198 203anti-parallel
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