Analysis of interatomic Contacts of Structural Units in PDB entry:
5YLY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YLY entry

There are 2 chains in PDB entry 5YLY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 596PHE 863
B
 ASP 595PHE 863
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5YLY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
692 701Right-handed alpha
Helix 2
AA2
A
744 757Right-handed alpha
Helix 3
AA3
A
773 777Right-handed 310
Helix 4
AA4
A
779 790Right-handed alpha
Helix 5
AA5
A
815 823Right-handed alpha
Helix 6
AA6
A
837 844Right-handed alpha
Helix 7
AA7
A
845 852Right-handed alpha
Helix 8
AA8
B
692 701Right-handed alpha
Helix 9
AA9
B
744 757Right-handed alpha
Helix 10
AB1
B
773 777Right-handed 310
Helix 11
AB2
B
779 790Right-handed alpha
Helix 12
AB3
B
815 823Right-handed alpha
Helix 13
AB4
B
837 845Right-handed alpha
Helix 14
AB5
B
845 852Right-handed alpha
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There are 6 sheets in PDB entry 5YLY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
656 661first strand
Strand 2
A
640 646anti-parallel
Strand 3
A
706 713anti-parallel
Strand 4
A
605 616anti-parallel
Strand 5
A
619 625anti-parallel
Strand 6
A
672 678anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
716 720first strand
Strand 2
A
723 726anti-parallel
Strand 3
A
729 732anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
810 811first strand
Strand 2
A
794 800parallel
Strand 3
A
764 771parallel
Strand 4
A
735 741parallel
Strand 5
A
830 835parallel
Strand 6
A
860 862parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
654 661first strand
Strand 2
B
640 648anti-parallel
Strand 3
B
706 713anti-parallel
Strand 4
B
605 616anti-parallel
Strand 5
B
619 625anti-parallel
Strand 6
B
672 678anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
716 720first strand
Strand 2
B
723 726anti-parallel
Strand 3
B
729 732anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
810 811first strand
Strand 2
B
794 800parallel
Strand 3
B
764 771parallel
Strand 4
B
735 741parallel
Strand 5
B
830 835parallel
Strand 6
B
860 862parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il