Analysis of interatomic Contacts of Structural Units in PDB entry:
5YM0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YM0 entry

There is 1 chain in PDB entry 5YM0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 39GLU 608
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5YM0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 62Right-handed alpha
Helix 2
AA2
A
63 65Right-handed 310
Helix 3
AA3
A
66 76Right-handed alpha
Helix 4
AA4
A
81 85Right-handed 310
Helix 5
AA5
A
103 118Right-handed alpha
Helix 6
AA6
A
131 136Right-handed alpha
Helix 7
AA7
A
138 142Right-handed 310
Helix 8
AA8
A
143 163Right-handed alpha
Helix 9
AA9
A
177 188Right-handed alpha
Helix 10
AB1
A
249 261Right-handed alpha
Helix 11
AB2
A
275 296Right-handed alpha
Helix 12
AB3
A
298 303Right-handed alpha
Helix 13
AB4
A
304 319Right-handed alpha
Helix 14
AB5
A
322 335Right-handed alpha
Helix 15
AB6
A
340 351Right-handed alpha
Helix 16
AB7
A
364 371Right-handed alpha
Helix 17
AB8
A
372 384Right-handed alpha
Helix 18
AB9
A
398 404Right-handed alpha
Helix 19
AC1
A
462 473Right-handed alpha
Helix 20
AC2
A
474 478Right-handed 310
Helix 21
AC3
A
499 508Right-handed alpha
Helix 22
AC4
A
537 541Right-handed 310
Helix 23
AC5
A
542 547Right-handed 310
Helix 24
AC6
A
567 578Right-handed alpha
Helix 25
AC7
A
587 597Right-handed alpha
Helix 26
AC8
A
599 603Right-handed 310
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There are 3 sheets in PDB entry 5YM0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 126first strand
Strand 2
A
87 92parallel
Strand 3
A
166 170parallel
Strand 4
A
191 193parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
429 431first strand
Strand 2
A
442 444anti-parallel
Strand 3
A
530 532anti-parallel
Strand 4
A
515 518parallel
Strand 5
A
481 484parallel
Strand 6
A
452 460parallel
Strand 7
A
552 556anti-parallel
Strand 8
A
561 564anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
497 498first strand
Strand 2
A
521 522parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il