Analysis of interatomic Contacts of Structural Units in PDB entry:
5YM3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YM3 entry

There is 1 chain in PDB entry 5YM3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 28VAL 493
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5YM3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 44Right-handed 310
Helix 2
AA2
A
47 60Right-handed alpha
Helix 3
AA3
A
77 86Right-handed alpha
Helix 4
AA4
A
99 104Right-handed 310
Helix 5
AA5
A
105 110Right-handed alpha
Helix 6
AA6
A
117 130Right-handed alpha
Helix 7
AA7
A
133 140Right-handed alpha
Helix 8
AA8
A
140 162Right-handed alpha
Helix 9
AA9
A
167 185Right-handed alpha
Helix 10
AB1
A
193 211Right-handed alpha
Helix 11
AB2
A
214 218Right-handed 310
Helix 12
AB3
A
219 223Right-handed 310
Helix 13
AB4
A
229 259Right-handed alpha
Helix 14
AB5
A
267 279Right-handed alpha
Helix 15
AB6
A
284 299Right-handed alpha
Helix 16
AB7
A
299 317Right-handed alpha
Helix 17
AB8
A
317 333Right-handed alpha
Helix 18
AB9
A
339 345Right-handed 310
Helix 19
AC1
A
346 360Right-handed alpha
Helix 20
AC2
A
391 397Right-handed alpha
Helix 21
AC3
A
409 414Right-handed 310
Helix 22
AC4
A
439 458Right-handed alpha
Helix 23
AC5
A
467 474Right-handed alpha
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There are 4 sheets in PDB entry 5YM3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 67first strand
Strand 2
A
70 75anti-parallel
Strand 3
A
387 390parallel
Strand 4
A
369 370anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 166first strand
Strand 2
A
488 492anti-parallel
Strand 3
A
459 462anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 377first strand
Strand 2
A
380 382anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
475 476first strand
Strand 2
A
482 483anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il