Analysis of interatomic Contacts of Structural Units in PDB entry:
5YMR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5YMR entry

There are 4 chains in PDB entry 5YMR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ARG 31	MET 828
D	ARG 31	MET 828
C	VAL 32	MET 828
A	ARG 31	MET 828

There are167 helices in PDB entry 5YMR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	31	39	Right-handed alpha
Helix 2	AA2	B	48	59	Right-handed alpha
Helix 3	AA3	B	65	81	Right-handed alpha
Helix 4	AA4	B	105	110	Right-handed alpha
Helix 5	AA5	B	112	120	Right-handed alpha
Helix 6	AA6	B	121	123	Right-handed 310
Helix 7	AA7	B	131	142	Right-handed alpha
Helix 8	AA8	B	142	147	Right-handed alpha
Helix 9	AA9	B	150	159	Right-handed alpha
Helix 10	AB1	B	160	168	Right-handed alpha
Helix 11	AB2	B	183	187	Right-handed 310
Helix 12	AB3	B	195	203	Right-handed alpha
Helix 13	AB4	B	203	218	Right-handed alpha
Helix 14	AB5	B	222	228	Right-handed alpha
Helix 15	AB6	B	229	261	Right-handed alpha
Helix 16	AB7	B	263	280	Right-handed alpha
Helix 17	AB8	B	287	306	Right-handed alpha
Helix 18	AB9	B	316	321	Right-handed alpha
Helix 19	AC1	B	321	331	Right-handed alpha
Helix 20	AC2	B	335	353	Right-handed alpha
Helix 21	AC3	B	359	365	Right-handed alpha
Helix 22	AC4	B	389	402	Right-handed alpha
Helix 23	AC5	B	418	430	Right-handed alpha
Helix 24	AC6	B	441	451	Right-handed alpha
Helix 25	AC7	B	454	460	Right-handed alpha
Helix 26	AC8	B	486	495	Right-handed alpha
Helix 27	AC9	B	499	503	Right-handed 310
Helix 28	AD1	B	513	517	Right-handed 310
Helix 29	AD2	B	519	550	Right-handed alpha
Helix 30	AD3	B	555	561	Right-handed alpha
Helix 31	AD4	B	562	569	Right-handed alpha
Helix 32	AD5	B	590	605	Right-handed alpha
Helix 33	AD6	B	612	622	Right-handed alpha
Helix 34	AD7	B	627	635	Right-handed alpha
Helix 35	AD8	B	644	666	Right-handed alpha
Helix 36	AD9	B	667	670	Right-handed 310
Helix 37	AE1	B	682	689	Right-handed alpha
Helix 38	AE2	B	718	728	Right-handed alpha
Helix 39	AE3	B	747	750	Right-handed 310
Helix 40	AE4	B	751	769	Right-handed alpha
Helix 41	AE5	B	780	790	Right-handed alpha
Helix 42	AE6	B	809	811	Right-handed 310
Helix 43	AE7	B	812	822	Right-handed alpha
Helix 44	AE8	D	32	39	Right-handed alpha
Helix 45	AE9	D	48	59	Right-handed alpha
Helix 46	AF1	D	65	81	Right-handed alpha
Helix 47	AF2	D	105	110	Right-handed alpha
Helix 48	AF3	D	112	120	Right-handed alpha
Helix 49	AF4	D	121	123	Right-handed 310
Helix 50	AF5	D	131	142	Right-handed alpha
Helix 51	AF6	D	142	147	Right-handed alpha
Helix 52	AF7	D	150	159	Right-handed alpha
Helix 53	AF8	D	160	168	Right-handed alpha
Helix 54	AF9	D	183	187	Right-handed 310
Helix 55	AG1	D	195	218	Right-handed alpha
Helix 56	AG2	D	222	229	Right-handed alpha
Helix 57	AG3	D	229	261	Right-handed alpha
Helix 58	AG4	D	263	280	Right-handed alpha
Helix 59	AG5	D	287	306	Right-handed alpha
Helix 60	AG6	D	316	321	Right-handed alpha
Helix 61	AG7	D	321	331	Right-handed alpha
Helix 62	AG8	D	335	353	Right-handed alpha
Helix 63	AG9	D	359	365	Right-handed alpha
Helix 64	AH1	D	389	402	Right-handed alpha
Helix 65	AH2	D	418	430	Right-handed alpha
Helix 66	AH3	D	441	450	Right-handed alpha
Helix 67	AH4	D	454	460	Right-handed alpha
Helix 68	AH5	D	486	495	Right-handed alpha
Helix 69	AH6	D	499	503	Right-handed 310
Helix 70	AH7	D	513	517	Right-handed 310
Helix 71	AH8	D	519	550	Right-handed alpha
Helix 72	AH9	D	555	561	Right-handed alpha
Helix 73	AI1	D	562	569	Right-handed alpha
Helix 74	AI2	D	590	605	Right-handed alpha
Helix 75	AI3	D	612	622	Right-handed alpha
Helix 76	AI4	D	627	635	Right-handed alpha
Helix 77	AI5	D	644	666	Right-handed alpha
Helix 78	AI6	D	667	670	Right-handed 310
Helix 79	AI7	D	682	688	Right-handed alpha
Helix 80	AI8	D	718	728	Right-handed alpha
Helix 81	AI9	D	747	750	Right-handed 310
Helix 82	AJ1	D	751	769	Right-handed alpha
Helix 83	AJ2	D	780	789	Right-handed alpha
Helix 84	AJ3	D	809	811	Right-handed 310
Helix 85	AJ4	D	812	821	Right-handed alpha
Helix 86	AJ5	C	33	39	Right-handed alpha
Helix 87	AJ6	C	48	59	Right-handed alpha
Helix 88	AJ7	C	65	81	Right-handed alpha
Helix 89	AJ8	C	105	110	Right-handed alpha
Helix 90	AJ9	C	112	120	Right-handed alpha
Helix 91	AK1	C	121	123	Right-handed 310
Helix 92	AK2	C	131	142	Right-handed alpha
Helix 93	AK3	C	142	147	Right-handed alpha
Helix 94	AK4	C	150	159	Right-handed alpha
Helix 95	AK5	C	160	168	Right-handed alpha
Helix 96	AK6	C	195	218	Right-handed alpha
Helix 97	AK7	C	222	229	Right-handed alpha
Helix 98	AK8	C	229	261	Right-handed alpha
Helix 99	AK9	C	263	280	Right-handed alpha
Helix 100	AL1	C	287	306	Right-handed alpha
Helix 101	AL2	C	316	321	Right-handed alpha
Helix 102	AL3	C	321	331	Right-handed alpha
Helix 103	AL4	C	335	353	Right-handed alpha
Helix 104	AL5	C	359	365	Right-handed alpha
Helix 105	AL6	C	389	402	Right-handed alpha
Helix 106	AL7	C	418	431	Right-handed alpha
Helix 107	AL8	C	441	450	Right-handed alpha
Helix 108	AL9	C	454	460	Right-handed alpha
Helix 109	AM1	C	486	495	Right-handed alpha
Helix 110	AM2	C	499	503	Right-handed 310
Helix 111	AM3	C	513	517	Right-handed 310
Helix 112	AM4	C	519	550	Right-handed alpha
Helix 113	AM5	C	555	561	Right-handed alpha
Helix 114	AM6	C	562	569	Right-handed alpha
Helix 115	AM7	C	590	605	Right-handed alpha
Helix 116	AM8	C	612	622	Right-handed alpha
Helix 117	AM9	C	627	635	Right-handed alpha
Helix 118	AN1	C	644	666	Right-handed alpha
Helix 119	AN2	C	667	670	Right-handed 310
Helix 120	AN3	C	682	688	Right-handed alpha
Helix 121	AN4	C	718	728	Right-handed alpha
Helix 122	AN5	C	751	769	Right-handed alpha
Helix 123	AN6	C	780	790	Right-handed alpha
Helix 124	AN7	C	809	811	Right-handed 310
Helix 125	AN8	C	812	822	Right-handed alpha
Helix 126	AN9	A	32	39	Right-handed alpha
Helix 127	AO1	A	48	59	Right-handed alpha
Helix 128	AO2	A	65	81	Right-handed alpha
Helix 129	AO3	A	105	110	Right-handed alpha
Helix 130	AO4	A	112	120	Right-handed alpha
Helix 131	AO5	A	121	123	Right-handed 310
Helix 132	AO6	A	131	142	Right-handed alpha
Helix 133	AO7	A	142	147	Right-handed alpha
Helix 134	AO8	A	150	159	Right-handed alpha
Helix 135	AO9	A	160	168	Right-handed alpha
Helix 136	AP1	A	183	187	Right-handed 310
Helix 137	AP2	A	195	217	Right-handed alpha
Helix 138	AP3	A	222	228	Right-handed alpha
Helix 139	AP4	A	229	260	Right-handed alpha
Helix 140	AP5	A	263	280	Right-handed alpha
Helix 141	AP6	A	287	306	Right-handed alpha
Helix 142	AP7	A	316	321	Right-handed alpha
Helix 143	AP8	A	321	331	Right-handed alpha
Helix 144	AP9	A	335	353	Right-handed alpha
Helix 145	AQ1	A	359	365	Right-handed alpha
Helix 146	AQ2	A	389	402	Right-handed alpha
Helix 147	AQ3	A	418	430	Right-handed alpha
Helix 148	AQ4	A	441	450	Right-handed alpha
Helix 149	AQ5	A	454	460	Right-handed alpha
Helix 150	AQ6	A	486	495	Right-handed alpha
Helix 151	AQ7	A	499	503	Right-handed 310
Helix 152	AQ8	A	513	517	Right-handed 310
Helix 153	AQ9	A	519	550	Right-handed alpha
Helix 154	AR1	A	555	561	Right-handed alpha
Helix 155	AR2	A	562	569	Right-handed alpha
Helix 156	AR3	A	590	605	Right-handed alpha
Helix 157	AR4	A	612	622	Right-handed alpha
Helix 158	AR5	A	627	635	Right-handed alpha
Helix 159	AR6	A	644	666	Right-handed alpha
Helix 160	AR7	A	667	670	Right-handed 310
Helix 161	AR8	A	682	688	Right-handed alpha
Helix 162	AR9	A	718	728	Right-handed alpha
Helix 163	AS1	A	747	750	Right-handed 310
Helix 164	AS2	A	751	769	Right-handed alpha
Helix 165	AS3	A	780	789	Right-handed alpha
Helix 166	AS4	A	809	811	Right-handed 310
Helix 167	AS5	A	812	822	Right-handed alpha

There are 20 sheets in PDB entry 5YMR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	47	first strand
Strand 2	B	101	103	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	181	first strand
Strand 2	B	483	485	anti-parallel
Strand 3	B	583	589	parallel
Strand 4	B	672	677	parallel
Strand 5	B	736	739	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	378	first strand
Strand 2	B	409	413	parallel
Strand 3	B	437	440	parallel
Strand 4	B	773	778	anti-parallel
Strand 5	B	742	745	parallel
Strand 6	B	824	825	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	462	464	first strand
Strand 2	B	468	470	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	798	800	first strand
Strand 2	B	805	807	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	47	first strand
Strand 2	D	101	103	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	180	181	first strand
Strand 2	D	483	485	anti-parallel
Strand 3	D	583	589	parallel
Strand 4	D	672	677	parallel
Strand 5	D	736	739	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	375	378	first strand
Strand 2	D	409	413	parallel
Strand 3	D	437	440	parallel
Strand 4	D	773	778	anti-parallel
Strand 5	D	742	745	parallel
Strand 6	D	824	825	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	462	464	first strand
Strand 2	D	468	470	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	798	800	first strand
Strand 2	D	805	807	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	101	103	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	181	first strand
Strand 2	C	482	485	anti-parallel
Strand 3	C	583	589	parallel
Strand 4	C	672	677	parallel
Strand 5	C	736	739	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	375	378	first strand
Strand 2	C	409	413	parallel
Strand 3	C	437	440	parallel
Strand 4	C	773	778	anti-parallel
Strand 5	C	742	745	parallel
Strand 6	C	824	825	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	462	464	first strand
Strand 2	C	468	470	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	798	800	first strand
Strand 2	C	805	807	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	46	first strand
Strand 2	A	101	102	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	181	first strand
Strand 2	A	483	485	anti-parallel
Strand 3	A	583	589	parallel
Strand 4	A	672	677	parallel
Strand 5	A	736	739	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	378	first strand
Strand 2	A	409	413	parallel
Strand 3	A	437	440	parallel
Strand 4	A	773	778	anti-parallel
Strand 5	A	742	745	parallel
Strand 6	A	824	825	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	462	464	first strand
Strand 2	A	468	470	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	798	800	first strand
Strand 2	A	805	807	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5YMR

Analysis of interatomic Contacts of Structural Units in PDB entry:
5YMR