Analysis of interatomic Contacts of Structural Units in PDB entry:
5YMS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YMS entry

There are 8 chains in PDB entry 5YMS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0LEU 160
B
 MET 0LEU 160
C
 VAL 1LEU 160
D
 VAL 1LEU 160
E
 VAL 1LEU 160
F
 VAL 1LEU 160
G
 MET 0LEU 160
H
 VAL 1THR 126
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 5YMS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
148 159Right-handed alpha
Helix 2
AA2
B
148 159Right-handed alpha
Helix 3
AA3
C
129 133Right-handed 310
Helix 4
AA4
C
148 159Right-handed alpha
Helix 5
AA5
D
129 133Right-handed 310
Helix 6
AA6
D
148 159Right-handed alpha
Helix 7
AA7
E
129 133Right-handed 310
Helix 8
AA8
E
148 159Right-handed alpha
Helix 9
AA9
F
148 159Right-handed alpha
Helix 10
AB1
G
148 159Right-handed alpha
Helix 11
AB2
H
148 159Right-handed alpha
Back to top of page

There are 22 sheets in PDB entry 5YMS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
141 145anti-parallel
Strand 3
A
17 22anti-parallel
Strand 4
A
100 106anti-parallel
Strand 5
A
109 116anti-parallel
Strand 6
A
89 96parallel
Strand 7
A
74 81anti-parallel
Strand 8
A
39 45anti-parallel
Strand 9
A
28 33anti-parallel
Strand 10
A
134 137anti-parallel
Strand 11
A
10 11anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
141 145anti-parallel
Strand 3
A
17 22anti-parallel
Strand 4
A
100 106anti-parallel
Strand 5
A
109 116anti-parallel
Strand 6
A
121 126anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 58first strand
Strand 2
A
61 69anti-parallel
Back to list of sheets
Back to top of page

There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 6first strand
Strand 2
B
141 145anti-parallel
Strand 3
B
17 22anti-parallel
Strand 4
B
100 106anti-parallel
Strand 5
B
109 116anti-parallel
Strand 6
B
89 96parallel
Strand 7
B
74 81anti-parallel
Strand 8
B
39 45anti-parallel
Strand 9
B
27 33anti-parallel
Strand 10
B
134 137anti-parallel
Strand 11
B
10 11anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 6first strand
Strand 2
B
141 145anti-parallel
Strand 3
B
17 22anti-parallel
Strand 4
B
100 106anti-parallel
Strand 5
B
109 116anti-parallel
Strand 6
B
121 126anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 58first strand
Strand 2
B
61 69anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 11first strand
Strand 2
C
134 137anti-parallel
Strand 3
C
27 33anti-parallel
Strand 4
C
39 45anti-parallel
Strand 5
C
74 81anti-parallel
Strand 6
C
89 96anti-parallel
Strand 7
C
109 116parallel
Strand 8
C
121 126anti-parallel
Back to list of sheets
Back to top of page

There are 13 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 11first strand
Strand 2
C
134 137anti-parallel
Strand 3
C
27 33anti-parallel
Strand 4
C
39 45anti-parallel
Strand 5
C
74 81anti-parallel
Strand 6
C
89 96anti-parallel
Strand 7
C
109 116parallel
Strand 8
C
100 106anti-parallel
Strand 9
C
17 22anti-parallel
Strand 10
C
141 145anti-parallel
Strand 11
C
2 6anti-parallel
Strand 12
H
61 69anti-parallel
Strand 13
H
49 58anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
49 58first strand
Strand 2
C
61 69anti-parallel
Back to list of sheets
Back to top of page

There are 11 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 6first strand
Strand 2
D
141 145anti-parallel
Strand 3
D
17 22anti-parallel
Strand 4
D
100 106anti-parallel
Strand 5
D
109 116anti-parallel
Strand 6
D
89 96parallel
Strand 7
D
74 81anti-parallel
Strand 8
D
39 45anti-parallel
Strand 9
D
27 33anti-parallel
Strand 10
D
134 137anti-parallel
Strand 11
D
10 11anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 6first strand
Strand 2
D
141 145anti-parallel
Strand 3
D
17 22anti-parallel
Strand 4
D
100 106anti-parallel
Strand 5
D
109 116anti-parallel
Strand 6
D
121 126anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
49 58first strand
Strand 2
D
61 69anti-parallel
Back to list of sheets
Back to top of page

There are 11 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 6first strand
Strand 2
E
140 145anti-parallel
Strand 3
E
17 22anti-parallel
Strand 4
E
100 106anti-parallel
Strand 5
E
109 116anti-parallel
Strand 6
E
89 96parallel
Strand 7
E
74 81anti-parallel
Strand 8
E
39 45anti-parallel
Strand 9
E
27 33anti-parallel
Strand 10
E
134 137anti-parallel
Strand 11
E
10 11anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 6first strand
Strand 2
E
140 145anti-parallel
Strand 3
E
17 22anti-parallel
Strand 4
E
100 106anti-parallel
Strand 5
E
109 116anti-parallel
Strand 6
E
121 126anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
49 58first strand
Strand 2
E
61 69anti-parallel
Back to list of sheets
Back to top of page

There are 11 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
3 6first strand
Strand 2
F
141 145anti-parallel
Strand 3
F
17 22anti-parallel
Strand 4
F
100 106anti-parallel
Strand 5
F
109 116anti-parallel
Strand 6
F
89 96parallel
Strand 7
F
74 81anti-parallel
Strand 8
F
39 45anti-parallel
Strand 9
F
27 33anti-parallel
Strand 10
F
134 137anti-parallel
Strand 11
F
10 11anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
3 6first strand
Strand 2
F
141 145anti-parallel
Strand 3
F
17 22anti-parallel
Strand 4
F
100 106anti-parallel
Strand 5
F
109 116anti-parallel
Strand 6
F
121 126anti-parallel
Back to list of sheets
Back to top of page

There are 13 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
49 58first strand
Strand 2
F
61 69anti-parallel
Strand 3
G
1 6anti-parallel
Strand 4
G
141 145anti-parallel
Strand 5
G
17 22anti-parallel
Strand 6
G
100 106anti-parallel
Strand 7
G
109 116anti-parallel
Strand 8
G
89 96parallel
Strand 9
G
74 81anti-parallel
Strand 10
G
39 45anti-parallel
Strand 11
G
27 33anti-parallel
Strand 12
G
134 137anti-parallel
Strand 13
G
10 11anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
49 58first strand
Strand 2
F
61 69anti-parallel
Strand 3
G
1 6anti-parallel
Strand 4
G
141 145anti-parallel
Strand 5
G
17 22anti-parallel
Strand 6
G
100 106anti-parallel
Strand 7
G
109 116anti-parallel
Strand 8
G
121 126anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
49 58first strand
Strand 2
G
61 69anti-parallel
Back to list of sheets
Back to top of page

There are 11 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 6first strand
Strand 2
H
141 145anti-parallel
Strand 3
H
17 22anti-parallel
Strand 4
H
100 106anti-parallel
Strand 5
H
109 116anti-parallel
Strand 6
H
89 96parallel
Strand 7
H
74 81anti-parallel
Strand 8
H
39 45anti-parallel
Strand 9
H
27 33anti-parallel
Strand 10
H
134 137anti-parallel
Strand 11
H
10 11anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 6first strand
Strand 2
H
141 145anti-parallel
Strand 3
H
17 22anti-parallel
Strand 4
H
100 106anti-parallel
Strand 5
H
109 116anti-parallel
Strand 6
H
121 126anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il