Analysis of interatomic Contacts of Structural Units in PDB entry:
5YNL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YNL entry

There is 1 chain in PDB entry 5YNL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 318
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5YNL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 41Right-handed alpha
Helix 2
AA2
A
42 50Right-handed alpha
Helix 3
AA3
A
80 100Right-handed alpha
Helix 4
AA4
A
111 113Right-handed 310
Helix 5
AA5
A
114 126Right-handed alpha
Helix 6
AA6
A
150 153Right-handed 310
Helix 7
AA7
A
154 160Right-handed alpha
Helix 8
AA8
A
197 204Right-handed alpha
Helix 9
AA9
A
211 231Right-handed alpha
Helix 10
AB1
A
245 247Right-handed 310
Helix 11
AB2
A
264 278Right-handed alpha
Helix 12
AB3
A
301 314Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5YNL.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
14 20parallel
Strand 3
A
104 109parallel
Strand 4
A
281 287parallel
Strand 5
A
238 243parallel
Strand 6
A
130 134parallel
Strand 7
A
185 190parallel
Strand 8
A
207 210parallel
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