Analysis of interatomic Contacts of Structural Units in PDB entry:
5YNT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YNT entry

There are 2 chains in PDB entry 5YNT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -5PRO 297
B
 SER -5PRO 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5YNT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 19Right-handed alpha
Helix 2
AA2
A
23 41Right-handed alpha
Helix 3
AA3
A
68 77Right-handed alpha
Helix 4
AA4
A
86 98Right-handed alpha
Helix 5
AA5
A
126 131Right-handed 310
Helix 6
AA6
A
135 141Right-handed alpha
Helix 7
AA7
A
141 148Right-handed alpha
Helix 8
AA8
A
173 177Right-handed 310
Helix 9
AA9
A
178 189Right-handed alpha
Helix 10
AB1
A
195 203Right-handed alpha
Helix 11
AB2
A
235 238Right-handed 310
Helix 12
AB3
A
239 249Right-handed alpha
Helix 13
AB4
A
283 292Right-handed alpha
Helix 14
AB5
B
-3 19Right-handed alpha
Helix 15
AB6
B
23 41Right-handed alpha
Helix 16
AB7
B
68 77Right-handed alpha
Helix 17
AB8
B
86 98Right-handed alpha
Helix 18
AB9
B
126 131Right-handed 310
Helix 19
AC1
B
138 140Right-handed 310
Helix 20
AC2
B
141 148Right-handed alpha
Helix 21
AC3
B
173 177Right-handed 310
Helix 22
AC4
B
178 189Right-handed alpha
Helix 23
AC5
B
195 203Right-handed alpha
Helix 24
AC6
B
235 238Right-handed 310
Helix 25
AC7
B
239 249Right-handed alpha
Helix 26
AC8
B
283 292Right-handed alpha
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There are 2 sheets in PDB entry 5YNT. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 124first strand
Strand 2
A
152 159anti-parallel
Strand 3
A
164 170anti-parallel
Strand 4
A
207 213anti-parallel
Strand 5
A
221 228anti-parallel
Strand 6
A
258 264anti-parallel
Strand 7
A
273 279anti-parallel
Strand 8
A
42 48anti-parallel
Strand 9
A
56 63anti-parallel
Strand 10
A
102 108anti-parallel
Strand 11
A
112 119anti-parallel
Strand 12
A
152 159anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 124first strand
Strand 2
B
152 159anti-parallel
Strand 3
B
164 170anti-parallel
Strand 4
B
207 213anti-parallel
Strand 5
B
221 228anti-parallel
Strand 6
B
258 264anti-parallel
Strand 7
B
273 279anti-parallel
Strand 8
B
42 48anti-parallel
Strand 9
B
56 63anti-parallel
Strand 10
B
102 108anti-parallel
Strand 11
B
112 119anti-parallel
Strand 12
B
152 159anti-parallel
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