Analysis of interatomic Contacts of Structural Units in PDB entry:
5YOA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YOA entry

There are 2 chains in PDB entry 5YOA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 368
B
 GLY 2VAL 367
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5YOA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 37Right-handed alpha
Helix 2
AA2
A
37 43Right-handed alpha
Helix 3
AA3
A
53 62Right-handed alpha
Helix 4
AA4
A
70 76Right-handed alpha
Helix 5
AA5
A
93 111Right-handed alpha
Helix 6
AA6
A
113 117Right-handed 310
Helix 7
AA7
A
133 142Right-handed alpha
Helix 8
AA8
A
153 155Right-handed 310
Helix 9
AA9
A
156 171Right-handed alpha
Helix 10
AB1
A
183 187Right-handed 310
Helix 11
AB2
A
239 244Right-handed alpha
Helix 12
AB3
A
255 278Right-handed alpha
Helix 13
AB4
A
281 283Right-handed 310
Helix 14
AB5
A
294 307Right-handed alpha
Helix 15
AB6
A
318 323Right-handed alpha
Helix 16
AB7
A
325 327Right-handed 310
Helix 17
AB8
A
328 338Right-handed alpha
Helix 18
AB9
A
339 341Right-handed 310
Helix 19
AC1
B
19 37Right-handed alpha
Helix 20
AC2
B
37 43Right-handed alpha
Helix 21
AC3
B
53 62Right-handed alpha
Helix 22
AC4
B
70 76Right-handed alpha
Helix 23
AC5
B
93 111Right-handed alpha
Helix 24
AC6
B
113 117Right-handed 310
Helix 25
AC7
B
133 143Right-handed alpha
Helix 26
AC8
B
153 155Right-handed 310
Helix 27
AC9
B
156 171Right-handed alpha
Helix 28
AD1
B
183 187Right-handed 310
Helix 29
AD2
B
255 279Right-handed alpha
Helix 30
AD3
B
281 283Right-handed 310
Helix 31
AD4
B
294 306Right-handed alpha
Helix 32
AD5
B
311 315Right-handed 310
Helix 33
AD6
B
318 323Right-handed alpha
Helix 34
AD7
B
325 327Right-handed 310
Helix 35
AD8
B
328 338Right-handed alpha
Helix 36
AD9
B
339 341Right-handed 310
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There are 5 sheets in PDB entry 5YOA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 18 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 290first strand
Strand 2
A
346 353parallel
Strand 3
A
357 366anti-parallel
Strand 4
A
216 226anti-parallel
Strand 5
A
3 11anti-parallel
Strand 6
A
202 210anti-parallel
Strand 7
A
175 182anti-parallel
Strand 8
A
119 123parallel
Strand 9
A
147 152parallel
Strand 10
B
147 152anti-parallel
Strand 11
B
119 123parallel
Strand 12
B
175 182parallel
Strand 13
B
202 210anti-parallel
Strand 14
B
3 11anti-parallel
Strand 15
B
216 226anti-parallel
Strand 16
B
357 366anti-parallel
Strand 17
B
346 353anti-parallel
Strand 18
B
285 290parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
65 67anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 233first strand
Strand 2
A
253 254anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 18first strand
Strand 2
B
65 67anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 233first strand
Strand 2
B
253 254anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il