Analysis of interatomic Contacts of Structural Units in PDB entry:
5YOQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YOQ entry

There are 2 chains in PDB entry 5YOQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 3LYS 573
B
 HIS 3ALA 569
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 5YOQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 31Right-handed alpha
Helix 2
AA2
A
35 56Right-handed alpha
Helix 3
AA3
A
65 75Right-handed alpha
Helix 4
AA4
A
79 85Right-handed alpha
Helix 5
AA5
A
86 92Right-handed 310
Helix 6
AA6
A
96 105Right-handed alpha
Helix 7
AA7
A
119 130Right-handed alpha
Helix 8
AA8
A
130 146Right-handed alpha
Helix 9
AA9
A
150 169Right-handed alpha
Helix 10
AB1
A
173 223Right-handed alpha
Helix 11
AB2
A
227 247Right-handed alpha
Helix 12
AB3
A
249 267Right-handed alpha
Helix 13
AB4
A
268 271Right-handed 310
Helix 14
AB5
A
277 281Right-handed 310
Helix 15
AB6
A
282 292Right-handed alpha
Helix 16
AB7
A
305 310Right-handed alpha
Helix 17
AB8
A
314 322Right-handed alpha
Helix 18
AB9
A
322 338Right-handed alpha
Helix 19
AC1
A
342 361Right-handed alpha
Helix 20
AC2
A
365 370Right-handed alpha
Helix 21
AC3
A
373 376Right-handed 310
Helix 22
AC4
A
377 397Right-handed alpha
Helix 23
AC5
A
398 415Right-handed alpha
Helix 24
AC6
A
419 438Right-handed alpha
Helix 25
AC7
A
445 467Right-handed alpha
Helix 26
AC8
A
470 478Right-handed alpha
Helix 27
AC9
A
483 490Right-handed alpha
Helix 28
AD1
A
511 516Right-handed alpha
Helix 29
AD2
A
517 536Right-handed alpha
Helix 30
AD3
A
540 561Right-handed alpha
Helix 31
AD4
A
565 571Right-handed alpha
Helix 32
AD5
B
6 31Right-handed alpha
Helix 33
AD6
B
35 56Right-handed alpha
Helix 34
AD7
B
65 75Right-handed alpha
Helix 35
AD8
B
85 90Right-handed 310
Helix 36
AD9
B
94 104Right-handed alpha
Helix 37
AE1
B
119 130Right-handed alpha
Helix 38
AE2
B
130 144Right-handed alpha
Helix 39
AE3
B
150 169Right-handed alpha
Helix 40
AE4
B
173 223Right-handed alpha
Helix 41
AE5
B
227 247Right-handed alpha
Helix 42
AE6
B
249 267Right-handed alpha
Helix 43
AE7
B
268 271Right-handed 310
Helix 44
AE8
B
275 280Right-handed alpha
Helix 45
AE9
B
282 292Right-handed alpha
Helix 46
AF1
B
304 310Right-handed alpha
Helix 47
AF2
B
314 322Right-handed alpha
Helix 48
AF3
B
322 337Right-handed alpha
Helix 49
AF4
B
342 361Right-handed alpha
Helix 50
AF5
B
365 370Right-handed alpha
Helix 51
AF6
B
371 376Right-handed 310
Helix 52
AF7
B
377 399Right-handed alpha
Helix 53
AF8
B
399 415Right-handed alpha
Helix 54
AF9
B
419 438Right-handed alpha
Helix 55
AG1
B
444 467Right-handed alpha
Helix 56
AG2
B
470 479Right-handed alpha
Helix 57
AG3
B
483 490Right-handed alpha
Helix 58
AG4
B
504 508Right-handed 310
Helix 59
AG5
B
510 515Right-handed 310
Helix 60
AG6
B
517 536Right-handed alpha
Helix 61
AG7
B
540 559Right-handed alpha
Helix 62
AG8
B
563 568Right-handed alpha
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There are no sheets in PDB entry 5YOQ
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