Analysis of interatomic Contacts of Structural Units in PDB entry:
5YOT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5YOT entry

There are 2 chains in PDB entry 5YOT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 26	GLN 779
B	LYS 26	GLN 779

There are 66 helices in PDB entry 5YOT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	31	Right-handed 310
Helix 2	AA2	A	35	46	Right-handed alpha
Helix 3	AA3	A	48	56	Right-handed alpha
Helix 4	AA4	A	62	64	Right-handed 310
Helix 5	AA5	A	73	85	Right-handed alpha
Helix 6	AA6	A	95	114	Right-handed alpha
Helix 7	AA7	A	140	145	Right-handed alpha
Helix 8	AA8	A	146	148	Right-handed 310
Helix 9	AA9	A	149	166	Right-handed alpha
Helix 10	AB1	A	187	191	Right-handed 310
Helix 11	AB2	A	195	212	Right-handed alpha
Helix 12	AB3	A	228	232	Right-handed 310
Helix 13	AB4	A	240	248	Right-handed alpha
Helix 14	AB5	A	249	258	Right-handed alpha
Helix 15	AB6	A	279	284	Right-handed alpha
Helix 16	AB7	A	302	310	Right-handed alpha
Helix 17	AB8	A	320	329	Right-handed alpha
Helix 18	AB9	A	342	345	Right-handed 310
Helix 19	AC1	A	346	353	Right-handed alpha
Helix 20	AC2	A	357	375	Right-handed alpha
Helix 21	AC3	A	386	388	Right-handed 310
Helix 22	AC4	A	389	394	Right-handed alpha
Helix 23	AC5	A	396	411	Right-handed alpha
Helix 24	AC6	A	434	437	Right-handed 310
Helix 25	AC7	A	449	453	Right-handed 310
Helix 26	AC8	A	456	466	Right-handed alpha
Helix 27	AC9	A	486	496	Right-handed alpha
Helix 28	AD1	A	510	516	Right-handed alpha
Helix 29	AD2	A	536	546	Right-handed alpha
Helix 30	AD3	A	565	570	Right-handed alpha
Helix 31	AD4	A	582	592	Right-handed alpha
Helix 32	AD5	A	608	612	Right-handed 310
Helix 33	AD6	A	741	743	Right-handed 310
Helix 34	AD7	B	27	31	Right-handed 310
Helix 35	AD8	B	35	45	Right-handed alpha
Helix 36	AD9	B	48	56	Right-handed alpha
Helix 37	AE1	B	62	64	Right-handed 310
Helix 38	AE2	B	73	85	Right-handed alpha
Helix 39	AE3	B	95	114	Right-handed alpha
Helix 40	AE4	B	140	147	Right-handed alpha
Helix 41	AE5	B	149	166	Right-handed alpha
Helix 42	AE6	B	187	191	Right-handed 310
Helix 43	AE7	B	195	212	Right-handed alpha
Helix 44	AE8	B	228	232	Right-handed 310
Helix 45	AE9	B	240	248	Right-handed alpha
Helix 46	AF1	B	249	258	Right-handed alpha
Helix 47	AF2	B	279	284	Right-handed alpha
Helix 48	AF3	B	302	310	Right-handed alpha
Helix 49	AF4	B	320	329	Right-handed alpha
Helix 50	AF5	B	342	345	Right-handed 310
Helix 51	AF6	B	346	353	Right-handed alpha
Helix 52	AF7	B	357	375	Right-handed alpha
Helix 53	AF8	B	386	388	Right-handed 310
Helix 54	AF9	B	389	394	Right-handed alpha
Helix 55	AG1	B	396	411	Right-handed alpha
Helix 56	AG2	B	434	437	Right-handed 310
Helix 57	AG3	B	449	453	Right-handed 310
Helix 58	AG4	B	456	466	Right-handed alpha
Helix 59	AG5	B	467	469	Right-handed 310
Helix 60	AG6	B	486	496	Right-handed alpha
Helix 61	AG7	B	512	517	Right-handed alpha
Helix 62	AG8	B	536	546	Right-handed alpha
Helix 63	AG9	B	565	570	Right-handed alpha
Helix 64	AH1	B	582	592	Right-handed alpha
Helix 65	AH2	B	608	612	Right-handed 310
Helix 66	AH3	B	741	743	Right-handed 310

There are 18 sheets in PDB entry 5YOT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	A	87	89	parallel
Strand 3	A	121	124	parallel
Strand 4	A	171	172	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	222	first strand
Strand 2	A	263	266	parallel
Strand 3	A	296	298	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	271	first strand
Strand 2	A	274	275	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	412	416	first strand
Strand 2	A	572	577	anti-parallel
Strand 3	A	551	557	parallel
Strand 4	A	499	505	parallel
Strand 5	A	428	432	parallel
Strand 6	A	470	474	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	630	631	first strand
Strand 2	A	637	638	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	663	665	first strand
Strand 2	A	680	689	anti-parallel
Strand 3	A	669	670	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	663	665	first strand
Strand 2	A	680	689	anti-parallel
Strand 3	A	731	739	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	674	675	first strand
Strand 2	A	770	778	parallel
Strand 3	A	757	764	anti-parallel
Strand 4	A	696	706	anti-parallel
Strand 5	A	717	726	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	745	746	first strand
Strand 2	A	752	753	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	60	first strand
Strand 2	B	87	89	parallel
Strand 3	B	121	124	parallel
Strand 4	B	171	172	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	222	first strand
Strand 2	B	263	266	parallel
Strand 3	B	296	298	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	271	first strand
Strand 2	B	274	275	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	412	416	first strand
Strand 2	B	572	577	anti-parallel
Strand 3	B	551	557	parallel
Strand 4	B	499	505	parallel
Strand 5	B	428	432	parallel
Strand 6	B	470	474	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	630	631	first strand
Strand 2	B	637	638	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	663	665	first strand
Strand 2	B	680	689	anti-parallel
Strand 3	B	669	670	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	663	665	first strand
Strand 2	B	680	689	anti-parallel
Strand 3	B	731	739	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	674	675	first strand
Strand 2	B	770	778	parallel
Strand 3	B	757	764	anti-parallel
Strand 4	B	696	706	anti-parallel
Strand 5	B	717	726	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	745	746	first strand
Strand 2	B	752	753	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5YOT

Analysis of interatomic Contacts of Structural Units in PDB entry:
5YOT