Analysis of interatomic Contacts of Structural Units in PDB entry:
5YOW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YOW entry

There is 1 chain in PDB entry 5YOW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 0MET 432
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 5YOW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
131 135Right-handed 310
Helix 2
AA2
A
249 255Right-handed alpha
Helix 3
AA3
A
264 266Right-handed 310
Helix 4
AA4
A
285 293Right-handed alpha
Helix 5
AA5
A
320 322Right-handed 310
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There are 9 sheets in PDB entry 5YOW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 15first strand
Strand 2
A
23 35anti-parallel
Strand 3
A
324 333anti-parallel
Strand 4
A
198 207anti-parallel
Strand 5
A
192 195anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 76first strand
Strand 2
A
157 175anti-parallel
Strand 3
A
56 69anti-parallel
Strand 4
A
40 46anti-parallel
Strand 5
A
336 339anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 184first strand
Strand 2
A
157 175anti-parallel
Strand 3
A
216 220anti-parallel
Strand 4
A
226 229anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 299first strand
Strand 2
A
302 306anti-parallel
Strand 3
A
314 318anti-parallel
Strand 4
A
56 69anti-parallel
Strand 5
A
40 46anti-parallel
Strand 6
A
336 339anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 87first strand
Strand 2
A
142 151anti-parallel
Strand 3
A
121 128anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 247first strand
Strand 2
A
261 262anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 272first strand
Strand 2
A
277 281anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 390first strand
Strand 2
A
375 381anti-parallel
Strand 3
A
407 416anti-parallel
Strand 4
A
419 431anti-parallel
Strand 5
A
346 357parallel
Strand 6
A
363 371anti-parallel
Strand 7
A
393 397anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 390first strand
Strand 2
A
375 381anti-parallel
Strand 3
A
407 416anti-parallel
Strand 4
A
419 431anti-parallel
Strand 5
A
346 357parallel
Strand 6
A
363 371anti-parallel
Strand 7
A
400 401anti-parallel
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