Analysis of interatomic Contacts of Structural Units in PDB entry:
5YOX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YOX entry

There are 8 chains in PDB entry 5YOX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 7SER 212
B
 TRP 7SER 212
C
 TRP 7ASP 211
D
 TRP 7SER 212
E
 TRP 7SER 212
F
 LYS 8ASP 211
G
 TRP 7ASP 211
H
 TRP 7ASP 211
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 81 helices in PDB entry 5YOX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 13Right-handed 310
Helix 2
AA2
A
14 22Right-handed alpha
Helix 3
AA3
A
27 38Right-handed alpha
Helix 4
AA4
A
58 70Right-handed alpha
Helix 5
AA5
A
78 90Right-handed alpha
Helix 6
AA6
A
108 126Right-handed alpha
Helix 7
AA7
A
130 146Right-handed alpha
Helix 8
AA8
A
149 173Right-handed alpha
Helix 9
AA9
A
192 211Right-handed alpha
Helix 10
AB1
B
8 13Right-handed 310
Helix 11
AB2
B
16 23Right-handed alpha
Helix 12
AB3
B
27 37Right-handed alpha
Helix 13
AB4
B
38 40Right-handed 310
Helix 14
AB5
B
58 69Right-handed alpha
Helix 15
AB6
B
70 72Right-handed 310
Helix 16
AB7
B
78 87Right-handed alpha
Helix 17
AB8
B
108 125Right-handed alpha
Helix 18
AB9
B
125 130Right-handed alpha
Helix 19
AC1
B
130 147Right-handed alpha
Helix 20
AC2
B
149 172Right-handed alpha
Helix 21
AC3
B
186 190Right-handed 310
Helix 22
AC4
B
192 211Right-handed alpha
Helix 23
AC5
C
8 13Right-handed 310
Helix 24
AC6
C
14 22Right-handed alpha
Helix 25
AC7
C
27 37Right-handed alpha
Helix 26
AC8
C
58 69Right-handed alpha
Helix 27
AC9
C
78 89Right-handed alpha
Helix 28
AD1
C
109 125Right-handed alpha
Helix 29
AD2
C
130 146Right-handed alpha
Helix 30
AD3
C
150 172Right-handed alpha
Helix 31
AD4
C
192 210Right-handed alpha
Helix 32
AD5
D
8 13Right-handed 310
Helix 33
AD6
D
14 21Right-handed alpha
Helix 34
AD7
D
27 41Right-handed alpha
Helix 35
AD8
D
58 70Right-handed alpha
Helix 36
AD9
D
78 87Right-handed alpha
Helix 37
AE1
D
108 125Right-handed alpha
Helix 38
AE2
D
130 146Right-handed alpha
Helix 39
AE3
D
149 172Right-handed alpha
Helix 40
AE4
D
185 190Right-handed alpha
Helix 41
AE5
D
192 210Right-handed alpha
Helix 42
AE6
E
8 12Right-handed 310
Helix 43
AE7
E
14 23Right-handed alpha
Helix 44
AE8
E
27 39Right-handed alpha
Helix 45
AE9
E
58 69Right-handed alpha
Helix 46
AF1
E
70 72Right-handed 310
Helix 47
AF2
E
78 87Right-handed alpha
Helix 48
AF3
E
108 125Right-handed alpha
Helix 49
AF4
E
125 130Right-handed alpha
Helix 50
AF5
E
130 146Right-handed alpha
Helix 51
AF6
E
149 173Right-handed alpha
Helix 52
AF7
E
192 210Right-handed alpha
Helix 53
AF8
F
14 21Right-handed alpha
Helix 54
AF9
F
27 38Right-handed alpha
Helix 55
AG1
F
58 70Right-handed alpha
Helix 56
AG2
F
78 88Right-handed alpha
Helix 57
AG3
F
108 125Right-handed alpha
Helix 58
AG4
F
130 147Right-handed alpha
Helix 59
AG5
F
149 172Right-handed alpha
Helix 60
AG6
F
185 190Right-handed 310
Helix 61
AG7
F
192 207Right-handed alpha
Helix 62
AG8
G
14 23Right-handed alpha
Helix 63
AG9
G
27 36Right-handed alpha
Helix 64
AH1
G
58 70Right-handed alpha
Helix 65
AH2
G
78 89Right-handed alpha
Helix 66
AH3
G
109 125Right-handed alpha
Helix 67
AH4
G
125 130Right-handed alpha
Helix 68
AH5
G
130 146Right-handed alpha
Helix 69
AH6
G
149 172Right-handed alpha
Helix 70
AH7
G
192 211Right-handed alpha
Helix 71
AH8
H
8 13Right-handed 310
Helix 72
AH9
H
14 23Right-handed alpha
Helix 73
AI1
H
27 37Right-handed alpha
Helix 74
AI2
H
58 69Right-handed alpha
Helix 75
AI3
H
70 72Right-handed 310
Helix 76
AI4
H
78 90Right-handed alpha
Helix 77
AI5
H
111 125Right-handed alpha
Helix 78
AI6
H
130 142Right-handed alpha
Helix 79
AI7
H
149 172Right-handed alpha
Helix 80
AI8
H
186 190Right-handed 310
Helix 81
AI9
H
192 211Right-handed alpha
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There are no sheets in PDB entry 5YOX
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il