Analysis of interatomic Contacts of Structural Units in PDB entry:
5YOY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5YOY entry

There are 10 chains in PDB entry 5YOY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 6	SER 159
B	ARG 6	SER 159
C	ARG 6	SER 159
D	GLU 1	LYS 108
E	GLU 1	LYS 108
F	GLU 1	LYS 108
G	GLN 1	SER 126
H	GLN 1	SER 126
I	GLN 1	SER 125
J	ARG 6	ASP 130

There are 28 helices in PDB entry 5YOY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	138	142	Right-handed 310
Helix 2	AA2	A	146	149	Right-handed 310
Helix 3	AA3	B	138	142	Right-handed 310
Helix 4	AA4	B	146	149	Right-handed 310
Helix 5	AA5	C	138	142	Right-handed 310
Helix 6	AA6	C	146	149	Right-handed 310
Helix 7	AA7	D	79	83	Right-handed 310
Helix 8	AA8	F	79	83	Right-handed 310
Helix 9	AA9	G	28	32	Right-handed 310
Helix 10	AB1	G	87	91	Right-handed 310
Helix 11	AB2	H	28	32	Right-handed 310
Helix 12	AB3	H	87	91	Right-handed 310
Helix 13	AB4	I	28	32	Right-handed 310
Helix 14	AB5	I	87	91	Right-handed 310
Helix 15	AB6	J	138	142	Right-handed 310
Helix 16	AB7	J	146	149	Right-handed 310
Helix 17	AB8	K	138	142	Right-handed 310
Helix 18	AB9	K	146	149	Right-handed 310
Helix 19	AC1	L	138	142	Right-handed 310
Helix 20	AC2	L	146	149	Right-handed 310
Helix 21	AC3	M	79	83	Right-handed 310
Helix 22	AC4	O	79	83	Right-handed 310
Helix 23	AC5	P	28	32	Right-handed 310
Helix 24	AC6	P	87	91	Right-handed 310
Helix 25	AC7	Q	28	32	Right-handed 310
Helix 26	AC8	Q	87	91	Right-handed 310
Helix 27	AC9	R	28	32	Right-handed 310
Helix 28	AD1	R	87	91	Right-handed 310

There are 42 sheets in PDB entry 5YOY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	29	first strand
Strand 2	A	13	18	anti-parallel
Strand 3	A	151	156	anti-parallel
Strand 4	A	54	67	anti-parallel
Strand 5	A	113	126	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	38	first strand
Strand 2	A	13	18	anti-parallel
Strand 3	A	151	156	anti-parallel
Strand 4	A	54	67	anti-parallel
Strand 5	I	103	104	anti-parallel
Strand 6	I	108	109	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	44	first strand
Strand 2	A	47	49	anti-parallel
Strand 3	A	131	136	anti-parallel
Strand 4	A	76	83	anti-parallel
Strand 5	A	91	98	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	29	first strand
Strand 2	B	13	18	anti-parallel
Strand 3	B	151	156	anti-parallel
Strand 4	B	54	67	anti-parallel
Strand 5	B	113	126	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	38	first strand
Strand 2	B	13	18	anti-parallel
Strand 3	B	151	156	anti-parallel
Strand 4	B	54	67	anti-parallel
Strand 5	G	103	104	anti-parallel
Strand 6	G	108	109	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	44	first strand
Strand 2	B	47	49	anti-parallel
Strand 3	B	131	136	anti-parallel
Strand 4	B	76	83	anti-parallel
Strand 5	B	91	98	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	29	first strand
Strand 2	C	13	18	anti-parallel
Strand 3	C	151	158	anti-parallel
Strand 4	C	54	67	anti-parallel
Strand 5	C	113	126	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	38	first strand
Strand 2	C	13	18	anti-parallel
Strand 3	C	151	158	anti-parallel
Strand 4	C	54	67	anti-parallel
Strand 5	H	103	104	anti-parallel
Strand 6	H	108	109	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	44	first strand
Strand 2	C	47	49	anti-parallel
Strand 3	C	131	136	anti-parallel
Strand 4	C	74	83	anti-parallel
Strand 5	C	91	101	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	62	67	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	103	106	parallel
Strand 3	D	85	90	anti-parallel
Strand 4	D	33	38	anti-parallel
Strand 5	D	45	49	anti-parallel
Strand 6	D	53	54	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	62	67	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	103	106	parallel
Strand 3	E	85	90	anti-parallel
Strand 4	E	33	38	anti-parallel
Strand 5	E	45	49	anti-parallel
Strand 6	E	53	54	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	70	75	anti-parallel
Strand 4	F	62	67	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	103	106	parallel
Strand 3	F	85	90	anti-parallel
Strand 4	F	33	38	anti-parallel
Strand 5	F	45	49	anti-parallel
Strand 6	F	53	54	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	12	first strand
Strand 2	G	120	124	parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	33	39	anti-parallel
Strand 5	G	45	51	anti-parallel
Strand 6	G	58	60	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	120	124	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	68	73	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	120	124	parallel
Strand 3	I	92	99	anti-parallel
Strand 4	I	33	39	anti-parallel
Strand 5	I	45	51	anti-parallel
Strand 6	I	58	60	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	28	29	first strand
Strand 2	J	13	18	anti-parallel
Strand 3	J	151	156	anti-parallel
Strand 4	J	54	67	anti-parallel
Strand 5	J	113	126	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	36	38	first strand
Strand 2	J	13	18	anti-parallel
Strand 3	J	151	156	anti-parallel
Strand 4	J	54	67	anti-parallel
Strand 5	R	103	104	anti-parallel
Strand 6	R	108	109	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	42	44	first strand
Strand 2	J	47	49	anti-parallel
Strand 3	J	131	136	anti-parallel
Strand 4	J	76	83	anti-parallel
Strand 5	J	90	98	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	28	29	first strand
Strand 2	K	13	18	anti-parallel
Strand 3	K	151	156	anti-parallel
Strand 4	K	54	67	anti-parallel
Strand 5	K	113	126	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	36	38	first strand
Strand 2	K	13	18	anti-parallel
Strand 3	K	151	156	anti-parallel
Strand 4	K	54	67	anti-parallel
Strand 5	P	103	104	anti-parallel
Strand 6	P	108	109	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	42	44	first strand
Strand 2	K	47	49	anti-parallel
Strand 3	K	131	136	anti-parallel
Strand 4	K	74	83	anti-parallel
Strand 5	K	90	101	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	28	29	first strand
Strand 2	L	13	18	anti-parallel
Strand 3	L	151	156	anti-parallel
Strand 4	L	54	67	anti-parallel
Strand 5	L	113	126	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	36	38	first strand
Strand 2	L	13	18	anti-parallel
Strand 3	L	151	156	anti-parallel
Strand 4	L	54	67	anti-parallel
Strand 5	Q	103	104	anti-parallel
Strand 6	Q	108	109	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	42	44	first strand
Strand 2	L	47	49	anti-parallel
Strand 3	L	131	136	anti-parallel
Strand 4	L	74	83	anti-parallel
Strand 5	L	90	101	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	7	first strand
Strand 2	M	19	25	anti-parallel
Strand 3	M	70	75	anti-parallel
Strand 4	M	62	67	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	13	first strand
Strand 2	M	103	107	parallel
Strand 3	M	85	90	anti-parallel
Strand 4	M	33	38	anti-parallel
Strand 5	M	45	49	anti-parallel
Strand 6	M	53	54	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	7	first strand
Strand 2	N	19	25	anti-parallel
Strand 3	N	70	75	anti-parallel
Strand 4	N	62	67	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	12	first strand
Strand 2	N	103	106	parallel
Strand 3	N	85	90	anti-parallel
Strand 4	N	33	38	anti-parallel
Strand 5	N	45	49	anti-parallel
Strand 6	N	53	54	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	4	7	first strand
Strand 2	O	19	25	anti-parallel
Strand 3	O	70	75	anti-parallel
Strand 4	O	62	67	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	10	12	first strand
Strand 2	O	103	106	parallel
Strand 3	O	85	90	anti-parallel
Strand 4	O	33	38	anti-parallel
Strand 5	O	45	49	anti-parallel
Strand 6	O	53	54	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	3	7	first strand
Strand 2	P	18	25	anti-parallel
Strand 3	P	78	83	anti-parallel
Strand 4	P	68	73	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	10	12	first strand
Strand 2	P	120	124	parallel
Strand 3	P	92	99	anti-parallel
Strand 4	P	33	39	anti-parallel
Strand 5	P	45	51	anti-parallel
Strand 6	P	58	60	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	3	7	first strand
Strand 2	Q	18	25	anti-parallel
Strand 3	Q	78	83	anti-parallel
Strand 4	Q	68	73	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	10	11	first strand
Strand 2	Q	120	123	parallel
Strand 3	Q	92	99	anti-parallel
Strand 4	Q	33	39	anti-parallel
Strand 5	Q	45	51	anti-parallel
Strand 6	Q	58	60	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	3	7	first strand
Strand 2	R	18	25	anti-parallel
Strand 3	R	78	83	anti-parallel
Strand 4	R	68	73	anti-parallel

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There are 6 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	10	12	first strand
Strand 2	R	120	124	parallel
Strand 3	R	92	99	anti-parallel
Strand 4	R	33	39	anti-parallel
Strand 5	R	45	51	anti-parallel
Strand 6	R	58	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5YOY

Analysis of interatomic Contacts of Structural Units in PDB entry:
5YOY