Analysis of interatomic Contacts of Structural Units in PDB entry:
5YOZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YOZ entry

There is 1 chain in PDB entry 5YOZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 175
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 5YOZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 35Right-handed alpha
Helix 2
AA2
A
77 82Right-handed alpha
Helix 3
AA3
A
97 115Right-handed alpha
Helix 4
AA4
A
128 131Right-handed 310
Helix 5
AA5
A
137 148Right-handed alpha
Helix 6
AA6
A
157 161Right-handed 310
Helix 7
AA7
A
163 175Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5YOZ.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 57first strand
Strand 2
A
60 69anti-parallel
Strand 3
A
12 19parallel
Strand 4
A
88 94parallel
Strand 5
A
120 126parallel
Strand 6
A
152 156parallel
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