Analysis of interatomic Contacts of Structural Units in PDB entry:
5YP2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5YP2 entry

There are 2 chains in PDB entry 5YP2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 22	PRO 745
B	ALA 22	PRO 745

There are 34 helices in PDB entry 5YP2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	32	Right-handed alpha
Helix 2	AA2	A	83	88	Right-handed alpha
Helix 3	AA3	A	95	105	Right-handed alpha
Helix 4	AA4	A	141	144	Right-handed 310
Helix 5	AA5	A	203	210	Right-handed alpha
Helix 6	AA6	A	480	485	Right-handed alpha
Helix 7	AA7	A	543	554	Right-handed alpha
Helix 8	AA8	A	570	576	Right-handed alpha
Helix 9	AA9	A	583	598	Right-handed alpha
Helix 10	AB1	A	613	626	Right-handed alpha
Helix 11	AB2	A	641	645	Right-handed 310
Helix 12	AB3	A	646	655	Right-handed alpha
Helix 13	AB4	A	660	668	Right-handed alpha
Helix 14	AB5	A	668	673	Right-handed alpha
Helix 15	AB6	A	674	676	Right-handed 310
Helix 16	AB7	A	694	708	Right-handed alpha
Helix 17	AB8	A	725	744	Right-handed alpha
Helix 18	AB9	B	26	32	Right-handed alpha
Helix 19	AC1	B	83	88	Right-handed alpha
Helix 20	AC2	B	95	105	Right-handed alpha
Helix 21	AC3	B	141	144	Right-handed 310
Helix 22	AC4	B	203	210	Right-handed alpha
Helix 23	AC5	B	480	484	Right-handed 310
Helix 24	AC6	B	543	554	Right-handed alpha
Helix 25	AC7	B	570	576	Right-handed alpha
Helix 26	AC8	B	583	598	Right-handed alpha
Helix 27	AC9	B	613	626	Right-handed alpha
Helix 28	AD1	B	641	645	Right-handed 310
Helix 29	AD2	B	646	655	Right-handed alpha
Helix 30	AD3	B	656	659	Right-handed 310
Helix 31	AD4	B	660	668	Right-handed alpha
Helix 32	AD5	B	669	676	Right-handed 310
Helix 33	AD6	B	694	708	Right-handed alpha
Helix 34	AD7	B	724	744	Right-handed alpha

There are 24 sheets in PDB entry 5YP2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	46	first strand
Strand 2	A	52	58	anti-parallel
Strand 3	A	65	72	anti-parallel
Strand 4	A	78	82	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	46	first strand
Strand 2	A	52	58	anti-parallel
Strand 3	A	65	72	anti-parallel
Strand 4	A	111	112	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	118	first strand
Strand 2	A	124	129	anti-parallel
Strand 3	A	132	137	anti-parallel
Strand 4	A	146	148	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	161	first strand
Strand 2	A	167	172	anti-parallel
Strand 3	A	175	180	anti-parallel
Strand 4	A	185	188	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	199	first strand
Strand 2	A	225	231	anti-parallel
Strand 3	A	216	218	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	199	first strand
Strand 2	A	225	231	anti-parallel
Strand 3	A	264	270	anti-parallel
Strand 4	A	279	280	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	243	first strand
Strand 2	A	248	254	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	298	first strand
Strand 2	A	301	308	anti-parallel
Strand 3	A	313	320	anti-parallel
Strand 4	A	326	333	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	346	first strand
Strand 2	A	352	356	anti-parallel
Strand 3	A	363	367	anti-parallel
Strand 4	A	374	376	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	384	391	first strand
Strand 2	A	396	401	anti-parallel
Strand 3	A	410	415	anti-parallel
Strand 4	A	422	423	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	435	first strand
Strand 2	A	441	448	anti-parallel
Strand 3	A	451	459	anti-parallel
Strand 4	A	464	467	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	491	496	first strand
Strand 2	A	503	509	anti-parallel
Strand 3	A	557	561	anti-parallel
Strand 4	A	520	525	parallel
Strand 5	A	602	612	parallel
Strand 6	A	632	636	parallel
Strand 7	A	681	686	parallel
Strand 8	A	712	716	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	46	first strand
Strand 2	B	52	58	anti-parallel
Strand 3	B	65	72	anti-parallel
Strand 4	B	78	82	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	46	first strand
Strand 2	B	52	58	anti-parallel
Strand 3	B	65	72	anti-parallel
Strand 4	B	111	112	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	118	first strand
Strand 2	B	124	129	anti-parallel
Strand 3	B	132	137	anti-parallel
Strand 4	B	146	148	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	161	first strand
Strand 2	B	167	172	anti-parallel
Strand 3	B	175	180	anti-parallel
Strand 4	B	186	188	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	199	first strand
Strand 2	B	225	231	anti-parallel
Strand 3	B	216	218	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	199	first strand
Strand 2	B	225	231	anti-parallel
Strand 3	B	264	270	anti-parallel
Strand 4	B	279	281	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	243	first strand
Strand 2	B	248	254	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	289	298	first strand
Strand 2	B	301	308	anti-parallel
Strand 3	B	313	320	anti-parallel
Strand 4	B	325	333	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	346	first strand
Strand 2	B	352	356	anti-parallel
Strand 3	B	363	367	anti-parallel
Strand 4	B	374	376	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	384	391	first strand
Strand 2	B	396	401	anti-parallel
Strand 3	B	410	415	anti-parallel
Strand 4	B	422	423	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	435	first strand
Strand 2	B	441	448	anti-parallel
Strand 3	B	451	459	anti-parallel
Strand 4	B	464	467	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	490	496	first strand
Strand 2	B	503	509	anti-parallel
Strand 3	B	557	561	anti-parallel
Strand 4	B	520	525	parallel
Strand 5	B	602	612	parallel
Strand 6	B	632	636	parallel
Strand 7	B	681	686	parallel
Strand 8	B	712	716	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5YP2

Analysis of interatomic Contacts of Structural Units in PDB entry:
5YP2