Analysis of interatomic Contacts of Structural Units in PDB entry:
5YP3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5YP3 entry

There are 4 chains in PDB entry 5YP3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 22	PRO 745
B	ALA 22	PRO 745
C	ALA 22	PRO 745
D	ALA 22	PRO 745

There are 64 helices in PDB entry 5YP3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	32	Right-handed alpha
Helix 2	AA2	A	83	88	Right-handed alpha
Helix 3	AA3	A	95	105	Right-handed alpha
Helix 4	AA4	A	203	210	Right-handed alpha
Helix 5	AA5	A	480	484	Right-handed 310
Helix 6	AA6	A	543	554	Right-handed alpha
Helix 7	AA7	A	570	575	Right-handed alpha
Helix 8	AA8	A	576	578	Right-handed 310
Helix 9	AA9	A	583	598	Right-handed alpha
Helix 10	AB1	A	613	626	Right-handed alpha
Helix 11	AB2	A	641	645	Right-handed 310
Helix 12	AB3	A	646	655	Right-handed alpha
Helix 13	AB4	A	656	659	Right-handed 310
Helix 14	AB5	A	660	668	Right-handed alpha
Helix 15	AB6	A	669	676	Right-handed 310
Helix 16	AB7	A	694	707	Right-handed alpha
Helix 17	AB8	A	724	743	Right-handed alpha
Helix 18	AB9	B	26	32	Right-handed alpha
Helix 19	AC1	B	83	88	Right-handed alpha
Helix 20	AC2	B	95	105	Right-handed alpha
Helix 21	AC3	B	203	210	Right-handed alpha
Helix 22	AC4	B	480	484	Right-handed 310
Helix 23	AC5	B	543	554	Right-handed alpha
Helix 24	AC6	B	570	575	Right-handed alpha
Helix 25	AC7	B	583	598	Right-handed alpha
Helix 26	AC8	B	613	626	Right-handed alpha
Helix 27	AC9	B	646	655	Right-handed alpha
Helix 28	AD1	B	660	667	Right-handed alpha
Helix 29	AD2	B	669	673	Right-handed 310
Helix 30	AD3	B	694	707	Right-handed alpha
Helix 31	AD4	B	724	744	Right-handed alpha
Helix 32	AD5	C	26	32	Right-handed alpha
Helix 33	AD6	C	95	105	Right-handed alpha
Helix 34	AD7	C	203	210	Right-handed alpha
Helix 35	AD8	C	480	485	Right-handed alpha
Helix 36	AD9	C	543	554	Right-handed alpha
Helix 37	AE1	C	570	576	Right-handed alpha
Helix 38	AE2	C	583	599	Right-handed alpha
Helix 39	AE3	C	613	627	Right-handed alpha
Helix 40	AE4	C	641	645	Right-handed 310
Helix 41	AE5	C	646	655	Right-handed alpha
Helix 42	AE6	C	660	668	Right-handed alpha
Helix 43	AE7	C	669	672	Right-handed 310
Helix 44	AE8	C	694	707	Right-handed alpha
Helix 45	AE9	C	725	744	Right-handed alpha
Helix 46	AF1	D	26	32	Right-handed alpha
Helix 47	AF2	D	83	88	Right-handed alpha
Helix 48	AF3	D	95	106	Right-handed alpha
Helix 49	AF4	D	142	144	Right-handed 310
Helix 50	AF5	D	203	210	Right-handed alpha
Helix 51	AF6	D	480	485	Right-handed alpha
Helix 52	AF7	D	543	554	Right-handed alpha
Helix 53	AF8	D	570	575	Right-handed alpha
Helix 54	AF9	D	576	578	Right-handed 310
Helix 55	AG1	D	583	599	Right-handed alpha
Helix 56	AG2	D	613	626	Right-handed alpha
Helix 57	AG3	D	641	645	Right-handed 310
Helix 58	AG4	D	646	655	Right-handed alpha
Helix 59	AG5	D	656	659	Right-handed 310
Helix 60	AG6	D	660	668	Right-handed alpha
Helix 61	AG7	D	668	673	Right-handed alpha
Helix 62	AG8	D	674	676	Right-handed 310
Helix 63	AG9	D	694	707	Right-handed alpha
Helix 64	AH1	D	724	744	Right-handed alpha

There are 48 sheets in PDB entry 5YP3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	46	first strand
Strand 2	A	52	58	anti-parallel
Strand 3	A	65	72	anti-parallel
Strand 4	A	80	82	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	46	first strand
Strand 2	A	52	58	anti-parallel
Strand 3	A	65	72	anti-parallel
Strand 4	A	111	112	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	118	first strand
Strand 2	A	125	129	anti-parallel
Strand 3	A	132	136	anti-parallel
Strand 4	A	146	148	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	161	first strand
Strand 2	A	168	172	anti-parallel
Strand 3	A	175	179	anti-parallel
Strand 4	A	186	188	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	199	first strand
Strand 2	A	225	231	anti-parallel
Strand 3	A	216	218	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	199	first strand
Strand 2	A	225	231	anti-parallel
Strand 3	A	264	270	anti-parallel
Strand 4	A	279	281	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	240	first strand
Strand 2	A	251	254	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	296	first strand
Strand 2	A	301	308	anti-parallel
Strand 3	A	313	320	anti-parallel
Strand 4	A	325	333	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	346	first strand
Strand 2	A	352	356	anti-parallel
Strand 3	A	363	367	anti-parallel
Strand 4	A	374	376	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	384	391	first strand
Strand 2	A	396	401	anti-parallel
Strand 3	A	410	415	anti-parallel
Strand 4	A	422	423	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	435	first strand
Strand 2	A	441	447	anti-parallel
Strand 3	A	454	459	anti-parallel
Strand 4	A	464	467	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	490	496	first strand
Strand 2	A	503	509	anti-parallel
Strand 3	A	557	561	anti-parallel
Strand 4	A	520	526	parallel
Strand 5	A	602	612	parallel
Strand 6	A	632	636	parallel
Strand 7	A	681	686	parallel
Strand 8	A	712	716	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	46	first strand
Strand 2	B	52	58	anti-parallel
Strand 3	B	65	72	anti-parallel
Strand 4	B	77	82	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	46	first strand
Strand 2	B	52	58	anti-parallel
Strand 3	B	65	72	anti-parallel
Strand 4	B	111	112	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	118	first strand
Strand 2	B	124	129	anti-parallel
Strand 3	B	132	137	anti-parallel
Strand 4	B	146	148	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	161	first strand
Strand 2	B	167	172	anti-parallel
Strand 3	B	175	180	anti-parallel
Strand 4	B	185	188	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	199	first strand
Strand 2	B	225	231	anti-parallel
Strand 3	B	216	218	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	199	first strand
Strand 2	B	225	231	anti-parallel
Strand 3	B	264	270	anti-parallel
Strand 4	B	279	281	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	243	first strand
Strand 2	B	248	254	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	289	298	first strand
Strand 2	B	301	308	anti-parallel
Strand 3	B	313	320	anti-parallel
Strand 4	B	326	333	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	356	first strand
Strand 2	B	363	367	anti-parallel
Strand 3	B	374	376	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	384	391	first strand
Strand 2	B	396	401	anti-parallel
Strand 3	B	410	415	anti-parallel
Strand 4	B	422	423	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	435	first strand
Strand 2	B	441	448	anti-parallel
Strand 3	B	451	459	anti-parallel
Strand 4	B	464	467	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	490	496	first strand
Strand 2	B	503	509	anti-parallel
Strand 3	B	557	561	anti-parallel
Strand 4	B	520	525	parallel
Strand 5	B	602	612	parallel
Strand 6	B	632	636	parallel
Strand 7	B	681	686	parallel
Strand 8	B	712	716	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	46	first strand
Strand 2	C	52	58	anti-parallel
Strand 3	C	65	72	anti-parallel
Strand 4	C	78	82	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	46	first strand
Strand 2	C	52	58	anti-parallel
Strand 3	C	65	72	anti-parallel
Strand 4	C	111	112	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	118	first strand
Strand 2	C	124	129	anti-parallel
Strand 3	C	132	137	anti-parallel
Strand 4	C	147	148	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	161	first strand
Strand 2	C	167	172	anti-parallel
Strand 3	C	175	180	anti-parallel
Strand 4	C	185	188	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	197	199	first strand
Strand 2	C	225	231	anti-parallel
Strand 3	C	216	218	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	197	199	first strand
Strand 2	C	225	231	anti-parallel
Strand 3	C	264	270	anti-parallel
Strand 4	C	279	280	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	243	first strand
Strand 2	C	248	254	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	289	298	first strand
Strand 2	C	301	308	anti-parallel
Strand 3	C	313	320	anti-parallel
Strand 4	C	326	333	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	356	first strand
Strand 2	C	363	367	anti-parallel
Strand 3	C	374	376	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	384	391	first strand
Strand 2	C	396	401	anti-parallel
Strand 3	C	410	415	anti-parallel
Strand 4	C	422	423	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	430	435	first strand
Strand 2	C	441	447	anti-parallel
Strand 3	C	454	459	anti-parallel
Strand 4	C	464	467	anti-parallel

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There are 8 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	490	496	first strand
Strand 2	C	503	509	anti-parallel
Strand 3	C	557	561	anti-parallel
Strand 4	C	520	525	parallel
Strand 5	C	602	612	parallel
Strand 6	C	632	636	parallel
Strand 7	C	681	686	parallel
Strand 8	C	712	716	parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	46	first strand
Strand 2	D	52	58	anti-parallel
Strand 3	D	65	72	anti-parallel
Strand 4	D	77	82	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	46	first strand
Strand 2	D	52	58	anti-parallel
Strand 3	D	65	72	anti-parallel
Strand 4	D	111	112	parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	118	first strand
Strand 2	D	124	129	anti-parallel
Strand 3	D	132	137	anti-parallel
Strand 4	D	146	148	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	161	first strand
Strand 2	D	167	172	anti-parallel
Strand 3	D	175	180	anti-parallel
Strand 4	D	186	188	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	197	199	first strand
Strand 2	D	225	231	anti-parallel
Strand 3	D	216	218	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	197	199	first strand
Strand 2	D	225	231	anti-parallel
Strand 3	D	264	270	anti-parallel
Strand 4	D	279	280	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	243	first strand
Strand 2	D	248	254	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	289	298	first strand
Strand 2	D	301	308	anti-parallel
Strand 3	D	313	320	anti-parallel
Strand 4	D	325	333	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	345	346	first strand
Strand 2	D	352	356	anti-parallel
Strand 3	D	363	367	anti-parallel
Strand 4	D	374	376	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	384	391	first strand
Strand 2	D	396	401	anti-parallel
Strand 3	D	410	415	anti-parallel
Strand 4	D	422	423	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	430	435	first strand
Strand 2	D	441	447	anti-parallel
Strand 3	D	454	459	anti-parallel
Strand 4	D	464	467	anti-parallel

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There are 8 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	490	496	first strand
Strand 2	D	503	509	anti-parallel
Strand 3	D	557	561	anti-parallel
Strand 4	D	520	525	parallel
Strand 5	D	602	612	parallel
Strand 6	D	632	636	parallel
Strand 7	D	681	686	parallel
Strand 8	D	712	716	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5YP3

Analysis of interatomic Contacts of Structural Units in PDB entry:
5YP3